Hb_004108_090

Information

Type -
Description -
Location Contig4108: 39514-41218
Sequence    

Annotation

kegg
ID -
description -
nr
ID XP_012092491.1
description PREDICTED: uncharacterized protein LOC105650231 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004108_090 0.0 - - PREDICTED: uncharacterized protein LOC105650231 [Jatropha curcas]
2 Hb_000575_020 0.1187717502 - - PREDICTED: copper-transporting ATPase PAA1, chloroplastic [Jatropha curcas]
3 Hb_001369_240 0.1696752146 - - -
4 Hb_011004_010 0.1698617909 - - Mitochondrial carnitine/acylcarnitine carrier protein, putative [Ricinus communis]
5 Hb_007520_010 0.1843996529 - - PREDICTED: uncharacterized protein LOC105640383 [Jatropha curcas]
6 Hb_107504_010 0.1863027733 - - -
7 Hb_001035_040 0.1872423576 - - unnamed protein product [Coffea canephora]
8 Hb_159191_010 0.1889666755 - - protease inhibitor protein [Hevea brasiliensis]
9 Hb_000169_140 0.1944701106 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
10 Hb_026428_010 0.1955696772 - - copper transport protein ATOX1 [Hevea brasiliensis]
11 Hb_004218_210 0.196894307 transcription factor TF Family: Orphans hypothetical protein JCGZ_24525 [Jatropha curcas]
12 Hb_004738_010 0.1976893416 - - PREDICTED: N-acetyl-D-glucosamine kinase-like [Jatropha curcas]
13 Hb_004162_260 0.2001725889 transcription factor TF Family: C2H2 conserved hypothetical protein [Ricinus communis]
14 Hb_010582_010 0.2049297802 - - hypothetical protein POPTR_0011s15670g [Populus trichocarpa]
15 Hb_054074_010 0.2052826555 - - PREDICTED: uncharacterized protein LOC105645601 [Jatropha curcas]
16 Hb_104010_010 0.2058610565 - - hypothetical protein JCGZ_26423 [Jatropha curcas]
17 Hb_000803_050 0.2076040673 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
18 Hb_000567_280 0.2108891763 - - PREDICTED: uncharacterized protein At4g06598-like [Populus euphratica]
19 Hb_007140_020 0.2110931624 - - hypothetical protein CICLE_v10008419mg [Citrus clementina]
20 Hb_000258_100 0.2115115352 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004108_090 Hb_004108_090 Hb_000575_020 Hb_000575_020 Hb_004108_090--Hb_000575_020 Hb_001369_240 Hb_001369_240 Hb_004108_090--Hb_001369_240 Hb_011004_010 Hb_011004_010 Hb_004108_090--Hb_011004_010 Hb_007520_010 Hb_007520_010 Hb_004108_090--Hb_007520_010 Hb_107504_010 Hb_107504_010 Hb_004108_090--Hb_107504_010 Hb_001035_040 Hb_001035_040 Hb_004108_090--Hb_001035_040 Hb_000575_020--Hb_011004_010 Hb_000032_040 Hb_000032_040 Hb_000575_020--Hb_000032_040 Hb_001507_070 Hb_001507_070 Hb_000575_020--Hb_001507_070 Hb_000742_270 Hb_000742_270 Hb_000575_020--Hb_000742_270 Hb_000012_130 Hb_000012_130 Hb_000575_020--Hb_000012_130 Hb_002600_100 Hb_002600_100 Hb_001369_240--Hb_002600_100 Hb_001369_240--Hb_000575_020 Hb_001369_240--Hb_011004_010 Hb_004738_010 Hb_004738_010 Hb_001369_240--Hb_004738_010 Hb_026428_010 Hb_026428_010 Hb_001369_240--Hb_026428_010 Hb_011004_010--Hb_000032_040 Hb_011004_010--Hb_001507_070 Hb_011004_010--Hb_000742_270 Hb_003371_100 Hb_003371_100 Hb_011004_010--Hb_003371_100 Hb_000175_610 Hb_000175_610 Hb_011004_010--Hb_000175_610 Hb_000258_100 Hb_000258_100 Hb_007520_010--Hb_000258_100 Hb_000169_140 Hb_000169_140 Hb_007520_010--Hb_000169_140 Hb_003336_030 Hb_003336_030 Hb_007520_010--Hb_003336_030 Hb_004162_260 Hb_004162_260 Hb_007520_010--Hb_004162_260 Hb_010582_010 Hb_010582_010 Hb_007520_010--Hb_010582_010 Hb_001936_140 Hb_001936_140 Hb_107504_010--Hb_001936_140 Hb_012799_020 Hb_012799_020 Hb_107504_010--Hb_012799_020 Hb_002918_040 Hb_002918_040 Hb_107504_010--Hb_002918_040 Hb_054074_010 Hb_054074_010 Hb_107504_010--Hb_054074_010 Hb_000453_300 Hb_000453_300 Hb_107504_010--Hb_000453_300 Hb_000920_150 Hb_000920_150 Hb_001035_040--Hb_000920_150 Hb_000107_070 Hb_000107_070 Hb_001035_040--Hb_000107_070 Hb_001035_040--Hb_004738_010 Hb_001741_090 Hb_001741_090 Hb_001035_040--Hb_001741_090 Hb_003038_180 Hb_003038_180 Hb_001035_040--Hb_003038_180 Hb_148121_010 Hb_148121_010 Hb_001035_040--Hb_148121_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.514303 0.0422734 0.0758707 0.103196 0.0466167 0.081254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.6182 0.81741 0.469813 0.0749314 0.346146

CAGE analysis