Hb_004108_100

Information

Type -
Description -
Location Contig4108: 44559-54974
Sequence    

Annotation

kegg
ID tcc:TCM_004452
description REF4-related 1, putative isoform 2
nr
ID XP_012092293.1
description PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X2 [Jatropha curcas]
swissprot
ID F4IN69
description Mediator of RNA polymerase II transcription subunit 33B OS=Arabidopsis thaliana GN=MED33B PE=1 SV=1
trembl
ID A0A067JPN7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21970 PE=4 SV=1
Gene Ontology
ID GO:0016020
description mediator of rna polymerase ii transcription subunit 33b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40569: 44707-55001 , PASA_asmbl_40570: 51036-55001
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004108_100 0.0 - - PREDICTED: mediator of RNA polymerase II transcription subunit 33B isoform X2 [Jatropha curcas]
2 Hb_000960_100 0.0512421306 - - PREDICTED: uncharacterized protein At1g51745 [Jatropha curcas]
3 Hb_128743_010 0.0603105368 - - RNA-binding protein, putative [Ricinus communis]
4 Hb_000025_320 0.0630480304 - - PREDICTED: pentatricopeptide repeat-containing protein At4g28010 [Jatropha curcas]
5 Hb_006816_430 0.0645255519 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
6 Hb_144831_010 0.0663276535 transcription factor TF Family: MYB transcription factor, putative [Ricinus communis]
7 Hb_002022_070 0.0675394221 - - PREDICTED: histidine--tRNA ligase [Jatropha curcas]
8 Hb_001191_120 0.0678131751 - - PREDICTED: cleavage stimulating factor 64 isoform X1 [Jatropha curcas]
9 Hb_005496_110 0.0690044249 - - PREDICTED: uncharacterized protein LOC105107584 [Populus euphratica]
10 Hb_000671_070 0.0744735984 - - PREDICTED: uncharacterized protein LOC105630621 [Jatropha curcas]
11 Hb_003884_030 0.0762652429 - - GTP-binding protein alpha subunit, gna, putative [Ricinus communis]
12 Hb_002253_080 0.0775377033 - - PREDICTED: phosphatidylinositol 4-kinase beta 1-like [Jatropha curcas]
13 Hb_005539_090 0.0783768395 transcription factor TF Family: PHD PREDICTED: methyl-CpG-binding domain-containing protein 9 isoform X1 [Jatropha curcas]
14 Hb_019430_020 0.0797727481 - - PREDICTED: uncharacterized protein LOC105641844 isoform X1 [Jatropha curcas]
15 Hb_002615_090 0.0803545975 - - PREDICTED: protein SMG7 isoform X1 [Jatropha curcas]
16 Hb_003470_080 0.0830492059 transcription factor TF Family: SNF2 PREDICTED: protein PHOTOPERIOD-INDEPENDENT EARLY FLOWERING 1 isoform X1 [Jatropha curcas]
17 Hb_002235_300 0.0835540788 - - PREDICTED: pentatricopeptide repeat-containing protein At5g15280 isoform X1 [Jatropha curcas]
18 Hb_000768_070 0.0836336958 transcription factor TF Family: SNF2 PREDICTED: TATA-binding protein-associated factor BTAF1 isoform X2 [Jatropha curcas]
19 Hb_000035_290 0.0864153445 - - RNA recognition motif-containing family protein [Populus trichocarpa]
20 Hb_000170_150 0.0867231164 - - PREDICTED: uncharacterized protein LOC105638996 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_004108_100 Hb_004108_100 Hb_000960_100 Hb_000960_100 Hb_004108_100--Hb_000960_100 Hb_128743_010 Hb_128743_010 Hb_004108_100--Hb_128743_010 Hb_000025_320 Hb_000025_320 Hb_004108_100--Hb_000025_320 Hb_006816_430 Hb_006816_430 Hb_004108_100--Hb_006816_430 Hb_144831_010 Hb_144831_010 Hb_004108_100--Hb_144831_010 Hb_002022_070 Hb_002022_070 Hb_004108_100--Hb_002022_070 Hb_002615_090 Hb_002615_090 Hb_000960_100--Hb_002615_090 Hb_000960_100--Hb_002022_070 Hb_000960_100--Hb_000025_320 Hb_002235_300 Hb_002235_300 Hb_000960_100--Hb_002235_300 Hb_001235_230 Hb_001235_230 Hb_000960_100--Hb_001235_230 Hb_128743_010--Hb_000025_320 Hb_128743_010--Hb_144831_010 Hb_128743_010--Hb_000960_100 Hb_000661_200 Hb_000661_200 Hb_128743_010--Hb_000661_200 Hb_001959_020 Hb_001959_020 Hb_128743_010--Hb_001959_020 Hb_000671_070 Hb_000671_070 Hb_000025_320--Hb_000671_070 Hb_001191_120 Hb_001191_120 Hb_000025_320--Hb_001191_120 Hb_001550_060 Hb_001550_060 Hb_000025_320--Hb_001550_060 Hb_000025_320--Hb_002022_070 Hb_006420_040 Hb_006420_040 Hb_000025_320--Hb_006420_040 Hb_003203_030 Hb_003203_030 Hb_006816_430--Hb_003203_030 Hb_000265_230 Hb_000265_230 Hb_006816_430--Hb_000265_230 Hb_001123_260 Hb_001123_260 Hb_006816_430--Hb_001123_260 Hb_027346_010 Hb_027346_010 Hb_006816_430--Hb_027346_010 Hb_004117_140 Hb_004117_140 Hb_006816_430--Hb_004117_140 Hb_003785_040 Hb_003785_040 Hb_144831_010--Hb_003785_040 Hb_144831_010--Hb_000960_100 Hb_001718_090 Hb_001718_090 Hb_144831_010--Hb_001718_090 Hb_000032_010 Hb_000032_010 Hb_144831_010--Hb_000032_010 Hb_004884_010 Hb_004884_010 Hb_002022_070--Hb_004884_010 Hb_001021_200 Hb_001021_200 Hb_002022_070--Hb_001021_200 Hb_000028_510 Hb_000028_510 Hb_002022_070--Hb_000028_510
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.9708 25.5792 10.1883 8.73029 22.4528 20.4015
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.7549 7.9176 12.177 11.3555 19.3068

CAGE analysis