Hb_004108_170

Information

Type -
Description -
Location Contig4108: 134018-139053
Sequence    

Annotation

kegg
ID rcu:RCOM_0176310
description hypothetical protein
nr
ID XP_002533071.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9ZVS8
description Putative DUF21 domain-containing protein At1g03270 OS=Arabidopsis thaliana GN=CBSDUF4 PE=4 SV=2
trembl
ID B9T4A2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0176310 PE=4 SV=1
Gene Ontology
ID GO:0000166
description duf21 domain-containing protein at4g14240

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40585: 133904-138728
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004108_170 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000010_350 0.1170690908 - - PREDICTED: programmed cell death protein 4-like [Jatropha curcas]
3 Hb_003060_090 0.1241049249 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_20174 [Jatropha curcas]
4 Hb_000062_080 0.1266219827 transcription factor TF Family: ARR-B PREDICTED: two-component response regulator ARR11-like [Jatropha curcas]
5 Hb_127599_010 0.1271812364 - - hypothetical protein CISIN_1g0010462mg, partial [Citrus sinensis]
6 Hb_011861_080 0.1310209756 - - hypothetical protein JCGZ_06088 [Jatropha curcas]
7 Hb_000363_370 0.1377438609 - - PREDICTED: putative BPI/LBP family protein At1g04970 [Jatropha curcas]
8 Hb_065500_030 0.137789938 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI7 [Jatropha curcas]
9 Hb_000866_370 0.1383960306 - - synaptotagmin, putative [Ricinus communis]
10 Hb_000022_180 0.1389266133 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 isoform X1 [Jatropha curcas]
11 Hb_144744_010 0.1404758007 - - hypothetical protein JCGZ_19531 [Jatropha curcas]
12 Hb_000009_330 0.1436343725 transcription factor TF Family: LIM zinc ion binding protein, putative [Ricinus communis]
13 Hb_003544_070 0.1457548193 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007576_200 0.1497179023 - - amino acid transporter, putative [Ricinus communis]
15 Hb_020805_170 0.1513460663 - - PREDICTED: F-box protein CPR30-like [Jatropha curcas]
16 Hb_003398_070 0.1513899188 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 9 [Jatropha curcas]
17 Hb_003155_020 0.1523732736 - - Rpp4C3 [Medicago truncatula]
18 Hb_000406_110 0.1525289232 - - PREDICTED: transmembrane protein adipocyte-associated 1 [Jatropha curcas]
19 Hb_117895_010 0.1545936383 - - hypothetical protein JCGZ_17178 [Jatropha curcas]
20 Hb_000059_020 0.1546344186 - - PREDICTED: F-box protein SKP2A [Jatropha curcas]

Gene co-expression network

sample Hb_004108_170 Hb_004108_170 Hb_000010_350 Hb_000010_350 Hb_004108_170--Hb_000010_350 Hb_003060_090 Hb_003060_090 Hb_004108_170--Hb_003060_090 Hb_000062_080 Hb_000062_080 Hb_004108_170--Hb_000062_080 Hb_127599_010 Hb_127599_010 Hb_004108_170--Hb_127599_010 Hb_011861_080 Hb_011861_080 Hb_004108_170--Hb_011861_080 Hb_000363_370 Hb_000363_370 Hb_004108_170--Hb_000363_370 Hb_000010_350--Hb_000062_080 Hb_001865_060 Hb_001865_060 Hb_000010_350--Hb_001865_060 Hb_000866_370 Hb_000866_370 Hb_000010_350--Hb_000866_370 Hb_000448_060 Hb_000448_060 Hb_000010_350--Hb_000448_060 Hb_089100_040 Hb_089100_040 Hb_000010_350--Hb_089100_040 Hb_144744_010 Hb_144744_010 Hb_003060_090--Hb_144744_010 Hb_014834_060 Hb_014834_060 Hb_003060_090--Hb_014834_060 Hb_000123_350 Hb_000123_350 Hb_003060_090--Hb_000123_350 Hb_011828_030 Hb_011828_030 Hb_003060_090--Hb_011828_030 Hb_004032_040 Hb_004032_040 Hb_003060_090--Hb_004032_040 Hb_000189_100 Hb_000189_100 Hb_003060_090--Hb_000189_100 Hb_000062_080--Hb_001865_060 Hb_000062_080--Hb_127599_010 Hb_000062_080--Hb_000448_060 Hb_000802_190 Hb_000802_190 Hb_000062_080--Hb_000802_190 Hb_001141_360 Hb_001141_360 Hb_000062_080--Hb_001141_360 Hb_004218_090 Hb_004218_090 Hb_127599_010--Hb_004218_090 Hb_000169_170 Hb_000169_170 Hb_127599_010--Hb_000169_170 Hb_006738_050 Hb_006738_050 Hb_127599_010--Hb_006738_050 Hb_000700_060 Hb_000700_060 Hb_127599_010--Hb_000700_060 Hb_006683_040 Hb_006683_040 Hb_127599_010--Hb_006683_040 Hb_001414_040 Hb_001414_040 Hb_011861_080--Hb_001414_040 Hb_000571_160 Hb_000571_160 Hb_011861_080--Hb_000571_160 Hb_002631_200 Hb_002631_200 Hb_011861_080--Hb_002631_200 Hb_006907_140 Hb_006907_140 Hb_011861_080--Hb_006907_140 Hb_000049_150 Hb_000049_150 Hb_011861_080--Hb_000049_150 Hb_011287_050 Hb_011287_050 Hb_011861_080--Hb_011287_050 Hb_007894_130 Hb_007894_130 Hb_000363_370--Hb_007894_130 Hb_000406_110 Hb_000406_110 Hb_000363_370--Hb_000406_110 Hb_000059_020 Hb_000059_020 Hb_000363_370--Hb_000059_020 Hb_000363_370--Hb_144744_010 Hb_000134_340 Hb_000134_340 Hb_000363_370--Hb_000134_340 Hb_009028_010 Hb_009028_010 Hb_000363_370--Hb_009028_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.2217 36.4509 4.26331 10.0493 6.44925 9.24198
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.93909 2.69347 4.33896 16.3351 4.19013

CAGE analysis