Hb_004108_180

Information

Type -
Description -
Location Contig4108: 142817-144752
Sequence    

Annotation

kegg
ID pop:POPTR_0002s22540g
description POPTRDRAFT_411680; hypothetical protein
nr
ID XP_012092282.1
description PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
swissprot
ID Q689D6
description Protein ROOT PRIMORDIUM DEFECTIVE 1 OS=Arabidopsis thaliana GN=RPD1 PE=1 SV=1
trembl
ID A0A067JN95
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21961 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004108_180 0.0 - - PREDICTED: protein ROOT PRIMORDIUM DEFECTIVE 1 [Jatropha curcas]
2 Hb_005269_020 0.0981571046 transcription factor TF Family: bZIP PREDICTED: basic leucine zipper 61-like [Jatropha curcas]
3 Hb_001642_020 0.1109996359 - - PREDICTED: probable cinnamyl alcohol dehydrogenase 9 [Jatropha curcas]
4 Hb_001031_140 0.1116103624 - - PREDICTED: GDSL esterase/lipase At5g33370-like [Jatropha curcas]
5 Hb_001426_020 0.1127778742 - - hypothetical protein CICLE_v10033594mg, partial [Citrus clementina]
6 Hb_016734_100 0.1138796882 - - -
7 Hb_001141_180 0.114718892 - - non-specific lipid-transfer protein-like protein At2g13820 precursor [Jatropha curcas]
8 Hb_000487_080 0.11474778 - - PREDICTED: probable potassium transporter 13 [Jatropha curcas]
9 Hb_000189_300 0.122550433 transcription factor TF Family: Trihelix transcription factor, putative [Ricinus communis]
10 Hb_001728_070 0.1239867786 - - PREDICTED: probable glycosyltransferase At3g07620 [Jatropha curcas]
11 Hb_004735_030 0.1244050838 - - PREDICTED: cytochrome P450 734A1 [Jatropha curcas]
12 Hb_002043_020 0.1257092077 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH87 [Jatropha curcas]
13 Hb_000777_080 0.1277715551 - - hypothetical protein POPTR_0015s15410g [Populus trichocarpa]
14 Hb_001206_110 0.1281752832 - - PREDICTED: GDSL esterase/lipase At5g45910 [Jatropha curcas]
15 Hb_004880_020 0.1284872494 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD1-1 [Jatropha curcas]
16 Hb_068580_010 0.129590892 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X2 [Populus euphratica]
17 Hb_012035_010 0.1304845206 - - hypothetical protein JCGZ_21143 [Jatropha curcas]
18 Hb_008147_020 0.1315087148 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
19 Hb_002078_330 0.1329964151 - - lipid binding protein, putative [Ricinus communis]
20 Hb_004724_090 0.1332345197 - - PREDICTED: uncharacterized protein LOC105638638 [Jatropha curcas]

Gene co-expression network

sample Hb_004108_180 Hb_004108_180 Hb_005269_020 Hb_005269_020 Hb_004108_180--Hb_005269_020 Hb_001642_020 Hb_001642_020 Hb_004108_180--Hb_001642_020 Hb_001031_140 Hb_001031_140 Hb_004108_180--Hb_001031_140 Hb_001426_020 Hb_001426_020 Hb_004108_180--Hb_001426_020 Hb_016734_100 Hb_016734_100 Hb_004108_180--Hb_016734_100 Hb_001141_180 Hb_001141_180 Hb_004108_180--Hb_001141_180 Hb_007120_120 Hb_007120_120 Hb_005269_020--Hb_007120_120 Hb_000189_300 Hb_000189_300 Hb_005269_020--Hb_000189_300 Hb_000840_080 Hb_000840_080 Hb_005269_020--Hb_000840_080 Hb_008021_060 Hb_008021_060 Hb_005269_020--Hb_008021_060 Hb_009663_020 Hb_009663_020 Hb_005269_020--Hb_009663_020 Hb_001642_020--Hb_016734_100 Hb_001642_020--Hb_001031_140 Hb_001642_020--Hb_001426_020 Hb_000487_080 Hb_000487_080 Hb_001642_020--Hb_000487_080 Hb_001642_020--Hb_001141_180 Hb_001652_100 Hb_001652_100 Hb_001642_020--Hb_001652_100 Hb_001031_140--Hb_001141_180 Hb_001728_070 Hb_001728_070 Hb_001031_140--Hb_001728_070 Hb_001031_140--Hb_016734_100 Hb_001206_110 Hb_001206_110 Hb_001031_140--Hb_001206_110 Hb_002043_020 Hb_002043_020 Hb_001031_140--Hb_002043_020 Hb_001426_020--Hb_000487_080 Hb_001426_020--Hb_016734_100 Hb_001426_020--Hb_001031_140 Hb_163566_010 Hb_163566_010 Hb_001426_020--Hb_163566_010 Hb_005833_010 Hb_005833_010 Hb_001426_020--Hb_005833_010 Hb_016734_100--Hb_000487_080 Hb_016734_100--Hb_007120_120 Hb_016734_100--Hb_009663_020 Hb_004735_030 Hb_004735_030 Hb_001141_180--Hb_004735_030 Hb_001141_180--Hb_001728_070 Hb_000777_080 Hb_000777_080 Hb_001141_180--Hb_000777_080 Hb_001141_180--Hb_001206_110 Hb_013394_070 Hb_013394_070 Hb_001141_180--Hb_013394_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0360761 0 0.573651 0.411702 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.5222

CAGE analysis