Hb_004108_210

Information

Type -
Description -
Location Contig4108: 174649-177023
Sequence    

Annotation

kegg
ID rcu:RCOM_0558860
description phenazine biosynthesis protein, putative
nr
ID XP_002520768.1
description phenazine biosynthesis protein, putative [Ricinus communis]
swissprot
ID Q9KG32
description Uncharacterized isomerase BH0283 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=BH0283 PE=3 SV=1
trembl
ID B9S449
description Phenazine biosynthesis protein, putative OS=Ricinus communis GN=RCOM_0558860 PE=4 SV=1
Gene Ontology
ID GO:0003824
description phenazine biosynthesis

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40588: 174625-177012
cDNA
(Sanger)
(ID:Location)		 005_E11.ab1: 174625-176592 , 048_M21.ab1: 174625-176578

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004108_210 0.0 - - phenazine biosynthesis protein, putative [Ricinus communis]
2 Hb_000098_150 0.0632929541 - - DNA helicase hus2, putative [Ricinus communis]
3 Hb_005144_210 0.0855003859 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001221_580 0.0916987074 - - PREDICTED: recQ-mediated genome instability protein 1 [Jatropha curcas]
5 Hb_000296_010 0.1109648561 - - PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
6 Hb_005903_020 0.1113621868 - - 12-oxophytodienoate reductase 2 [Theobroma cacao]
7 Hb_004712_190 0.1123473953 - - PREDICTED: uncharacterized protein LOC105633105 [Jatropha curcas]
8 Hb_003687_120 0.112636163 - - PREDICTED: serine/threonine-protein kinase tricorner-like [Jatropha curcas]
9 Hb_001863_160 0.1153366892 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
10 Hb_011716_010 0.1156223764 - - PREDICTED: probable protein arginine N-methyltransferase 1.2 [Jatropha curcas]
11 Hb_000890_160 0.1182659492 - - PREDICTED: anaphase-promoting complex subunit 7 [Jatropha curcas]
12 Hb_001369_470 0.1200574394 - - PREDICTED: monocopper oxidase-like protein SKS1 [Jatropha curcas]
13 Hb_080147_020 0.1201610599 - - 3-hydroxyacyl-CoA dehyrogenase, putative [Ricinus communis]
14 Hb_001824_030 0.1264259872 - - plant sec1, putative [Ricinus communis]
15 Hb_003428_090 0.1271247622 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
16 Hb_014231_020 0.1280466809 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
17 Hb_002107_100 0.1295942793 - - PREDICTED: la-related protein 1C-like isoform X3 [Jatropha curcas]
18 Hb_002686_150 0.1302423097 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
19 Hb_002913_010 0.1326064594 - - PREDICTED: mitochondrial amidoxime reducing component 2-like isoform X1 [Jatropha curcas]
20 Hb_000229_050 0.1327439266 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_004108_210 Hb_004108_210 Hb_000098_150 Hb_000098_150 Hb_004108_210--Hb_000098_150 Hb_005144_210 Hb_005144_210 Hb_004108_210--Hb_005144_210 Hb_001221_580 Hb_001221_580 Hb_004108_210--Hb_001221_580 Hb_000296_010 Hb_000296_010 Hb_004108_210--Hb_000296_010 Hb_005903_020 Hb_005903_020 Hb_004108_210--Hb_005903_020 Hb_004712_190 Hb_004712_190 Hb_004108_210--Hb_004712_190 Hb_001863_160 Hb_001863_160 Hb_000098_150--Hb_001863_160 Hb_000098_150--Hb_005144_210 Hb_000098_150--Hb_001221_580 Hb_000098_150--Hb_004712_190 Hb_014231_020 Hb_014231_020 Hb_000098_150--Hb_014231_020 Hb_005144_210--Hb_004712_190 Hb_000703_160 Hb_000703_160 Hb_005144_210--Hb_000703_160 Hb_001369_470 Hb_001369_470 Hb_005144_210--Hb_001369_470 Hb_005144_210--Hb_014231_020 Hb_000890_160 Hb_000890_160 Hb_001221_580--Hb_000890_160 Hb_000567_090 Hb_000567_090 Hb_001221_580--Hb_000567_090 Hb_003428_090 Hb_003428_090 Hb_001221_580--Hb_003428_090 Hb_001221_580--Hb_005903_020 Hb_000296_010--Hb_000098_150 Hb_002913_010 Hb_002913_010 Hb_000296_010--Hb_002913_010 Hb_000098_030 Hb_000098_030 Hb_000296_010--Hb_000098_030 Hb_000296_010--Hb_005144_210 Hb_000940_050 Hb_000940_050 Hb_000296_010--Hb_000940_050 Hb_006438_020 Hb_006438_020 Hb_005903_020--Hb_006438_020 Hb_007426_220 Hb_007426_220 Hb_005903_020--Hb_007426_220 Hb_001232_090 Hb_001232_090 Hb_005903_020--Hb_001232_090 Hb_011716_010 Hb_011716_010 Hb_005903_020--Hb_011716_010 Hb_000926_060 Hb_000926_060 Hb_005903_020--Hb_000926_060 Hb_004712_190--Hb_014231_020 Hb_001500_120 Hb_001500_120 Hb_004712_190--Hb_001500_120 Hb_005977_030 Hb_005977_030 Hb_004712_190--Hb_005977_030 Hb_002686_080 Hb_002686_080 Hb_004712_190--Hb_002686_080 Hb_001191_080 Hb_001191_080 Hb_004712_190--Hb_001191_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.66805 13.276 31.2747 15.5105 5.72515 2.75964
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.95611 6.75903 3.1107 14.8982 7.28607

CAGE analysis