Hb_004108_230

Information

Type -
Description -
Location Contig4108: 194686-199444
Sequence    

Annotation

kegg
ID rcu:RCOM_0558710
description hypothetical protein
nr
ID XP_012092266.1
description PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JCE4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21948 PE=4 SV=1
Gene Ontology
ID GO:0031359
description kda chloroplast outer envelope membrane

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40593: 194883-197932 , PASA_asmbl_40594: 194861-198526 , PASA_asmbl_40597: 199131-199623
cDNA
(Sanger)
(ID:Location)		 024_B05.ab1: 199189-199605 , 029_E13.ab1: 199131-199584 , 031_K10.ab1: 199136-199605 , 040_B09.ab1: 199131-199584

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004108_230 0.0 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
2 Hb_002918_200 0.0522387124 - - -
3 Hb_000120_750 0.056948668 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
4 Hb_003175_040 0.057318554 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]
5 Hb_004837_140 0.0576683205 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
6 Hb_011794_070 0.0669541592 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
7 Hb_044662_070 0.0679982264 - - PREDICTED: hsp70-Hsp90 organizing protein 3 [Jatropha curcas]
8 Hb_012338_010 0.0727381239 - - conserved hypothetical protein [Ricinus communis]
9 Hb_005432_030 0.0728478477 - - PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Gossypium raimondii]
10 Hb_000170_010 0.0739167599 - - o-methyltransferase, putative [Ricinus communis]
11 Hb_003927_130 0.0751022837 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]
12 Hb_004204_120 0.0766378986 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
13 Hb_000840_030 0.0768132676 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
14 Hb_000834_270 0.0772619263 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
15 Hb_000134_330 0.0793240401 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
16 Hb_011465_040 0.0799219619 - - PREDICTED: transcription and mRNA export factor SUS1 isoform X1 [Jatropha curcas]
17 Hb_007479_020 0.0799298942 - - PREDICTED: CMP-sialic acid transporter 5 [Jatropha curcas]
18 Hb_000703_140 0.0800348069 - - transcription initiation factor TFIID subunit 13-like [Jatropha curcas]
19 Hb_001383_060 0.0805304309 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
20 Hb_001257_080 0.0812589499 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004108_230 Hb_004108_230 Hb_002918_200 Hb_002918_200 Hb_004108_230--Hb_002918_200 Hb_000120_750 Hb_000120_750 Hb_004108_230--Hb_000120_750 Hb_003175_040 Hb_003175_040 Hb_004108_230--Hb_003175_040 Hb_004837_140 Hb_004837_140 Hb_004108_230--Hb_004837_140 Hb_011794_070 Hb_011794_070 Hb_004108_230--Hb_011794_070 Hb_044662_070 Hb_044662_070 Hb_004108_230--Hb_044662_070 Hb_002918_200--Hb_004837_140 Hb_000834_270 Hb_000834_270 Hb_002918_200--Hb_000834_270 Hb_002918_200--Hb_003175_040 Hb_000170_010 Hb_000170_010 Hb_002918_200--Hb_000170_010 Hb_002027_210 Hb_002027_210 Hb_002918_200--Hb_002027_210 Hb_000120_750--Hb_004837_140 Hb_007479_020 Hb_007479_020 Hb_000120_750--Hb_007479_020 Hb_001383_060 Hb_001383_060 Hb_000120_750--Hb_001383_060 Hb_000317_340 Hb_000317_340 Hb_000120_750--Hb_000317_340 Hb_004204_120 Hb_004204_120 Hb_000120_750--Hb_004204_120 Hb_003408_020 Hb_003408_020 Hb_003175_040--Hb_003408_020 Hb_003175_040--Hb_004837_140 Hb_001691_210 Hb_001691_210 Hb_003175_040--Hb_001691_210 Hb_002716_070 Hb_002716_070 Hb_003175_040--Hb_002716_070 Hb_004837_140--Hb_000170_010 Hb_002963_010 Hb_002963_010 Hb_004837_140--Hb_002963_010 Hb_005997_010 Hb_005997_010 Hb_004837_140--Hb_005997_010 Hb_012338_010 Hb_012338_010 Hb_004837_140--Hb_012338_010 Hb_000329_040 Hb_000329_040 Hb_011794_070--Hb_000329_040 Hb_000260_080 Hb_000260_080 Hb_011794_070--Hb_000260_080 Hb_000703_140 Hb_000703_140 Hb_011794_070--Hb_000703_140 Hb_000883_050 Hb_000883_050 Hb_011794_070--Hb_000883_050 Hb_022250_040 Hb_022250_040 Hb_011794_070--Hb_022250_040 Hb_023386_080 Hb_023386_080 Hb_044662_070--Hb_023386_080 Hb_007924_020 Hb_007924_020 Hb_044662_070--Hb_007924_020 Hb_044662_070--Hb_003175_040 Hb_044662_070--Hb_003408_020 Hb_003376_120 Hb_003376_120 Hb_044662_070--Hb_003376_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
61.6383 12.6598 21.7034 18.2159 47.2146 54.5784
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
103.668 103.997 71.2258 23.3897 20.4763

CAGE analysis