Hb_004109_020

Information

Type -
Description -
Location Contig4109: 13747-17211
Sequence    

Annotation

kegg
ID rcu:RCOM_0747380
description 60S ribosomal protein L18a, plant, putative
nr
ID ADR71269.1
description 60S ribosomal protein L18aA [Hevea brasiliensis]
swissprot
ID Q8L9S1
description 60S ribosomal protein L18a-like protein OS=Arabidopsis thaliana GN=At1g29970 PE=2 SV=2
trembl
ID I3NMN2
description 60S ribosomal protein L18aA OS=Hevea brasiliensis GN=RPL18aA PE=2 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l18a-like protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40603: 13580-17134 , PASA_asmbl_40604: 15944-16100
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_020 0.0 - - 60S ribosomal protein L18aA [Hevea brasiliensis]
2 Hb_001300_270 0.0883890679 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
3 Hb_004724_160 0.0948225526 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
4 Hb_004005_010 0.0957125706 - - PREDICTED: uncharacterized protein LOC102623333 isoform X2 [Citrus sinensis]
5 Hb_001538_100 0.0957501177 - - PREDICTED: histone deacetylase 6 [Jatropha curcas]
6 Hb_001268_140 0.096806978 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001248_080 0.0972599849 - - PREDICTED: 40S ribosomal protein S29 [Nelumbo nucifera]
8 Hb_000025_600 0.1003791142 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Jatropha curcas]
9 Hb_001269_270 0.1012373971 - - 60S ribosomal protein L27B [Hevea brasiliensis]
10 Hb_007944_040 0.1017310135 - - 60S ribosomal protein L18aB [Hevea brasiliensis]
11 Hb_000028_400 0.1035041848 - - Protein SSU72, putative [Ricinus communis]
12 Hb_000085_330 0.1040676685 - - PREDICTED: 40S ribosomal protein S8 [Jatropha curcas]
13 Hb_000563_240 0.1050401153 - - PREDICTED: 60S ribosomal protein L19-3 [Jatropha curcas]
14 Hb_155764_020 0.1058993501 - - hypothetical protein B456_009G265500 [Gossypium raimondii]
15 Hb_000111_340 0.1069086686 - - peptidyl-prolyl cis-trans isomerase h, ppih, putative [Ricinus communis]
16 Hb_001045_080 0.1073105949 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
17 Hb_148930_010 0.1087015314 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
18 Hb_000264_090 0.109686778 - - PREDICTED: putative serine/threonine-protein kinase isoform X1 [Jatropha curcas]
19 Hb_010883_150 0.1097380875 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
20 Hb_011311_010 0.1111553548 - - 60S ribosomal protein L27C [Hevea brasiliensis]

Gene co-expression network

sample Hb_004109_020 Hb_004109_020 Hb_001300_270 Hb_001300_270 Hb_004109_020--Hb_001300_270 Hb_004724_160 Hb_004724_160 Hb_004109_020--Hb_004724_160 Hb_004005_010 Hb_004005_010 Hb_004109_020--Hb_004005_010 Hb_001538_100 Hb_001538_100 Hb_004109_020--Hb_001538_100 Hb_001268_140 Hb_001268_140 Hb_004109_020--Hb_001268_140 Hb_001248_080 Hb_001248_080 Hb_004109_020--Hb_001248_080 Hb_001300_270--Hb_001268_140 Hb_000134_330 Hb_000134_330 Hb_001300_270--Hb_000134_330 Hb_007944_040 Hb_007944_040 Hb_001300_270--Hb_007944_040 Hb_155764_020 Hb_155764_020 Hb_001300_270--Hb_155764_020 Hb_002296_060 Hb_002296_060 Hb_001300_270--Hb_002296_060 Hb_000111_340 Hb_000111_340 Hb_001300_270--Hb_000111_340 Hb_011311_010 Hb_011311_010 Hb_004724_160--Hb_011311_010 Hb_004724_160--Hb_001248_080 Hb_001269_270 Hb_001269_270 Hb_004724_160--Hb_001269_270 Hb_004724_160--Hb_001268_140 Hb_148930_010 Hb_148930_010 Hb_004724_160--Hb_148930_010 Hb_001045_080 Hb_001045_080 Hb_004724_160--Hb_001045_080 Hb_001818_020 Hb_001818_020 Hb_004005_010--Hb_001818_020 Hb_000526_150 Hb_000526_150 Hb_004005_010--Hb_000526_150 Hb_000580_080 Hb_000580_080 Hb_004005_010--Hb_000580_080 Hb_004005_010--Hb_001269_270 Hb_000970_010 Hb_000970_010 Hb_004005_010--Hb_000970_010 Hb_089839_020 Hb_089839_020 Hb_004005_010--Hb_089839_020 Hb_003376_130 Hb_003376_130 Hb_001538_100--Hb_003376_130 Hb_002540_030 Hb_002540_030 Hb_001538_100--Hb_002540_030 Hb_003086_100 Hb_003086_100 Hb_001538_100--Hb_003086_100 Hb_002107_120 Hb_002107_120 Hb_001538_100--Hb_002107_120 Hb_001538_100--Hb_148930_010 Hb_001268_140--Hb_000134_330 Hb_001268_140--Hb_007944_040 Hb_001268_140--Hb_001045_080 Hb_001268_140--Hb_155764_020 Hb_001268_140--Hb_001269_270 Hb_001248_080--Hb_155764_020 Hb_003398_120 Hb_003398_120 Hb_001248_080--Hb_003398_120 Hb_001248_080--Hb_148930_010 Hb_001998_050 Hb_001998_050 Hb_001248_080--Hb_001998_050 Hb_000563_240 Hb_000563_240 Hb_001248_080--Hb_000563_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
74.6536 57.6038 19.8712 33.8178 81.9253 84.6128
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
231.529 316.968 111.479 59.7897 19.9397

CAGE analysis