Hb_004109_050

Information

Type -
Description -
Location Contig4109: 36796-59342
Sequence    

Annotation

kegg
ID pop:POPTR_0011s09740g
description POPTRDRAFT_568599; GLUCAN SYNTHASE-LIKE 4 family protein
nr
ID XP_012074237.1
description PREDICTED: putative callose synthase 8 [Jatropha curcas]
swissprot
ID Q9LUD7
description Putative callose synthase 8 OS=Arabidopsis thaliana GN=CALS8 PE=2 SV=2
trembl
ID M5WML5
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000073mg PE=4 SV=1
Gene Ontology
ID GO:0000148
description callose synthase 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40618: 40563-41984 , PASA_asmbl_40619: 43659-44259 , PASA_asmbl_40620: 48735-49331 , PASA_asmbl_40621: 54577-56075 , PASA_asmbl_40623: 57931-58831 , PASA_asmbl_40624: 58898-59191
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_050 0.0 - - PREDICTED: putative callose synthase 8 [Jatropha curcas]
2 Hb_021576_070 0.0744264653 - - hypothetical protein PRUPE_ppa002736mg [Prunus persica]
3 Hb_000152_710 0.0814188484 - - PREDICTED: putative glycerol-3-phosphate transporter 1 [Jatropha curcas]
4 Hb_001754_020 0.0921609972 - - PREDICTED: kinesin-13A isoform X1 [Jatropha curcas]
5 Hb_001545_130 0.0926537536 - - sur2 hydroxylase/desaturase, putative [Ricinus communis]
6 Hb_000570_020 0.0928874702 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX9H isoform X1 [Jatropha curcas]
7 Hb_000395_110 0.0951663908 - - PREDICTED: molybdate-anion transporter [Jatropha curcas]
8 Hb_116349_120 0.0959213224 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_007537_030 0.097731602 - - PREDICTED: gamma aminobutyrate transaminase 3, chloroplastic [Jatropha curcas]
10 Hb_000260_510 0.1043738305 - - PREDICTED: probable galacturonosyltransferase 7 isoform X3 [Jatropha curcas]
11 Hb_147245_010 0.1062424047 - - casein kinase, putative [Ricinus communis]
12 Hb_000342_170 0.1063547746 - - PREDICTED: uncharacterized protein LOC100807540 isoform X2 [Glycine max]
13 Hb_018845_010 0.1084137227 - - PREDICTED: uncharacterized protein LOC105642055 [Jatropha curcas]
14 Hb_028639_030 0.1102414832 - - PREDICTED: transmembrane 9 superfamily member 2-like [Jatropha curcas]
15 Hb_002046_060 0.1103021855 - - PREDICTED: beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase [Jatropha curcas]
16 Hb_006469_070 0.1108499494 - - PREDICTED: F-box/kelch-repeat protein At1g22040 [Jatropha curcas]
17 Hb_003929_180 0.1111271404 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g17430 isoform X1 [Glycine max]
18 Hb_004223_140 0.1111356671 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
19 Hb_007416_070 0.1123744516 transcription factor TF Family: B3 hypothetical protein JCGZ_07038 [Jatropha curcas]
20 Hb_004218_130 0.1124920487 - - PREDICTED: uridine 5'-monophosphate synthase [Jatropha curcas]

Gene co-expression network

sample Hb_004109_050 Hb_004109_050 Hb_021576_070 Hb_021576_070 Hb_004109_050--Hb_021576_070 Hb_000152_710 Hb_000152_710 Hb_004109_050--Hb_000152_710 Hb_001754_020 Hb_001754_020 Hb_004109_050--Hb_001754_020 Hb_001545_130 Hb_001545_130 Hb_004109_050--Hb_001545_130 Hb_000570_020 Hb_000570_020 Hb_004109_050--Hb_000570_020 Hb_000395_110 Hb_000395_110 Hb_004109_050--Hb_000395_110 Hb_021576_070--Hb_000152_710 Hb_000701_030 Hb_000701_030 Hb_021576_070--Hb_000701_030 Hb_001216_110 Hb_001216_110 Hb_021576_070--Hb_001216_110 Hb_000418_020 Hb_000418_020 Hb_021576_070--Hb_000418_020 Hb_021576_070--Hb_001754_020 Hb_007537_030 Hb_007537_030 Hb_000152_710--Hb_007537_030 Hb_000152_710--Hb_001545_130 Hb_019280_020 Hb_019280_020 Hb_000152_710--Hb_019280_020 Hb_000494_030 Hb_000494_030 Hb_000152_710--Hb_000494_030 Hb_003975_010 Hb_003975_010 Hb_001754_020--Hb_003975_010 Hb_001691_040 Hb_001691_040 Hb_001754_020--Hb_001691_040 Hb_010672_020 Hb_010672_020 Hb_001754_020--Hb_010672_020 Hb_002272_240 Hb_002272_240 Hb_001754_020--Hb_002272_240 Hb_116349_120 Hb_116349_120 Hb_001754_020--Hb_116349_120 Hb_004218_130 Hb_004218_130 Hb_001545_130--Hb_004218_130 Hb_147245_010 Hb_147245_010 Hb_001545_130--Hb_147245_010 Hb_000003_030 Hb_000003_030 Hb_001545_130--Hb_000003_030 Hb_006351_020 Hb_006351_020 Hb_001545_130--Hb_006351_020 Hb_004032_210 Hb_004032_210 Hb_001545_130--Hb_004032_210 Hb_004943_040 Hb_004943_040 Hb_000570_020--Hb_004943_040 Hb_000570_020--Hb_116349_120 Hb_000570_020--Hb_007537_030 Hb_000375_300 Hb_000375_300 Hb_000570_020--Hb_000375_300 Hb_000283_140 Hb_000283_140 Hb_000570_020--Hb_000283_140 Hb_028639_030 Hb_028639_030 Hb_000570_020--Hb_028639_030 Hb_000260_510 Hb_000260_510 Hb_000395_110--Hb_000260_510 Hb_000395_110--Hb_010672_020 Hb_185830_060 Hb_185830_060 Hb_000395_110--Hb_185830_060 Hb_000979_130 Hb_000979_130 Hb_000395_110--Hb_000979_130 Hb_000665_180 Hb_000665_180 Hb_000395_110--Hb_000665_180 Hb_002193_060 Hb_002193_060 Hb_000395_110--Hb_002193_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.440021 1.46618 2.15995 4.32281 0.406085 0.60796
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.776545 0.458362 1.14571 1.55332 2.07051

CAGE analysis