Hb_004109_080

Information

Type -
Description -
Location Contig4109: 65184-73585
Sequence    

Annotation

kegg
ID mdm:103419884
description ubiquitin carboxyl-terminal hydrolase 15-like
nr
ID XP_011044931.1
description PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
swissprot
ID Q9FPS9
description Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis thaliana GN=UBP15 PE=2 SV=2
trembl
ID A0A061F8P4
description Ubiquitin-specific protease 15, putative isoform 3 OS=Theobroma cacao GN=TCM_032321 PE=4 SV=1
Gene Ontology
ID GO:0016787
description ubiquitin carboxyl-terminal hydrolase 15-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40628: 65259-73290
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_080 0.0 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 15-like isoform X1 [Populus euphratica]
2 Hb_004567_090 0.0402169936 - - PREDICTED: GPI transamidase component PIG-T [Jatropha curcas]
3 Hb_012498_010 0.0463038627 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM44-2 [Jatropha curcas]
4 Hb_005291_050 0.055332245 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6-like isoform X1 [Jatropha curcas]
5 Hb_000340_530 0.0588435817 - - hypothetical protein VITISV_016664 [Vitis vinifera]
6 Hb_002263_020 0.0609028001 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
7 Hb_000406_200 0.0610757417 - - PREDICTED: translation initiation factor eIF-2B subunit epsilon-like isoform X4 [Jatropha curcas]
8 Hb_000138_100 0.0618637314 - - bifunctional purine biosynthesis protein, putative [Ricinus communis]
9 Hb_002989_020 0.0623619035 - - PREDICTED: uncharacterized protein LOC105630013 isoform X2 [Jatropha curcas]
10 Hb_001902_030 0.0642671976 - - PREDICTED: SKP1-like protein 21 isoform X1 [Jatropha curcas]
11 Hb_011063_050 0.064645577 - - PREDICTED: pentatricopeptide repeat-containing protein At2g17670 [Jatropha curcas]
12 Hb_008847_030 0.065740817 - - PREDICTED: TLD domain-containing protein 1 [Jatropha curcas]
13 Hb_000260_350 0.0672514659 - - conserved hypothetical protein [Ricinus communis]
14 Hb_041290_020 0.0685133698 - - PREDICTED: centromere/kinetochore protein zw10 homolog isoform X2 [Jatropha curcas]
15 Hb_000830_030 0.0685722698 - - PREDICTED: uncharacterized protein LOC105644214 [Jatropha curcas]
16 Hb_010142_020 0.0689160228 - - conserved hypothetical protein [Ricinus communis]
17 Hb_029243_030 0.0696146325 - - PREDICTED: regulatory-associated protein of TOR 1 isoform X1 [Jatropha curcas]
18 Hb_001679_050 0.0703675642 - - PREDICTED: exocyst complex component EXO84B [Jatropha curcas]
19 Hb_007479_040 0.0707428819 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003683_020 0.0709538129 - - serine/threonine protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004109_080 Hb_004109_080 Hb_004567_090 Hb_004567_090 Hb_004109_080--Hb_004567_090 Hb_012498_010 Hb_012498_010 Hb_004109_080--Hb_012498_010 Hb_005291_050 Hb_005291_050 Hb_004109_080--Hb_005291_050 Hb_000340_530 Hb_000340_530 Hb_004109_080--Hb_000340_530 Hb_002263_020 Hb_002263_020 Hb_004109_080--Hb_002263_020 Hb_000406_200 Hb_000406_200 Hb_004109_080--Hb_000406_200 Hb_002110_190 Hb_002110_190 Hb_004567_090--Hb_002110_190 Hb_007479_040 Hb_007479_040 Hb_004567_090--Hb_007479_040 Hb_004567_090--Hb_012498_010 Hb_003411_040 Hb_003411_040 Hb_004567_090--Hb_003411_040 Hb_054865_150 Hb_054865_150 Hb_004567_090--Hb_054865_150 Hb_003683_020 Hb_003683_020 Hb_012498_010--Hb_003683_020 Hb_012498_010--Hb_005291_050 Hb_000156_010 Hb_000156_010 Hb_012498_010--Hb_000156_010 Hb_010142_020 Hb_010142_020 Hb_012498_010--Hb_010142_020 Hb_001902_030 Hb_001902_030 Hb_005291_050--Hb_001902_030 Hb_005291_050--Hb_000156_010 Hb_005291_050--Hb_002263_020 Hb_000254_090 Hb_000254_090 Hb_005291_050--Hb_000254_090 Hb_002989_020 Hb_002989_020 Hb_000340_530--Hb_002989_020 Hb_011063_050 Hb_011063_050 Hb_000340_530--Hb_011063_050 Hb_093458_040 Hb_093458_040 Hb_000340_530--Hb_093458_040 Hb_001679_050 Hb_001679_050 Hb_000340_530--Hb_001679_050 Hb_000116_450 Hb_000116_450 Hb_000340_530--Hb_000116_450 Hb_000138_100 Hb_000138_100 Hb_002263_020--Hb_000138_100 Hb_002263_020--Hb_001902_030 Hb_002592_060 Hb_002592_060 Hb_002263_020--Hb_002592_060 Hb_007426_110 Hb_007426_110 Hb_002263_020--Hb_007426_110 Hb_003517_040 Hb_003517_040 Hb_002263_020--Hb_003517_040 Hb_000406_200--Hb_000138_100 Hb_000347_430 Hb_000347_430 Hb_000406_200--Hb_000347_430 Hb_001862_130 Hb_001862_130 Hb_000406_200--Hb_001862_130 Hb_188281_040 Hb_188281_040 Hb_000406_200--Hb_188281_040 Hb_000406_200--Hb_000340_530
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.88786 7.47409 8.02981 12.0297 9.19413 10.9629
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.20713 10.4098 10.2268 11.0717 12.4495

CAGE analysis