Hb_004109_090

Information

Type -
Description -
Location Contig4109: 75388-81375
Sequence    

Annotation

kegg
ID rcu:RCOM_0746720
description ubiquitin-protein ligase, putative
nr
ID XP_002530130.1
description ubiquitin-protein ligase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SVW1
description Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_0746720 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring u-box superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40630: 75676-81089
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_090 0.0 - - ubiquitin-protein ligase, putative [Ricinus communis]
2 Hb_003175_010 0.0584383253 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
3 Hb_003929_160 0.063667291 - - PREDICTED: pyruvate dehydrogenase (acetyl-transferring) kinase, mitochondrial [Jatropha curcas]
4 Hb_000409_020 0.0642041917 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]
5 Hb_004724_200 0.0648016156 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
6 Hb_001818_090 0.0651296897 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005663_060 0.0662348289 - - PREDICTED: uncharacterized protein LOC105770600 [Gossypium raimondii]
8 Hb_003195_070 0.0669635449 - - Uncharacterized protein isoform 1 [Theobroma cacao]
9 Hb_000796_220 0.066995158 - - PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
10 Hb_019280_040 0.0674002656 - - PREDICTED: pentatricopeptide repeat-containing protein At4g18975, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000926_280 0.0689648186 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
12 Hb_002016_110 0.0692259579 - - transducin family protein [Populus trichocarpa]
13 Hb_000030_300 0.0697486929 - - Thioredoxin, putative [Ricinus communis]
14 Hb_048937_040 0.06993944 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
15 Hb_007441_120 0.070793274 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]
16 Hb_000395_170 0.0713499431 - - PREDICTED: probable transcriptional regulatory protein At2g25830 [Jatropha curcas]
17 Hb_000103_180 0.0714110615 - - PREDICTED: stress-induced-phosphoprotein 1 [Jatropha curcas]
18 Hb_002811_360 0.072590038 - - PREDICTED: GDP-mannose 3,5-epimerase 2 [Eucalyptus grandis]
19 Hb_000808_230 0.0736538599 - - PREDICTED: peptide chain release factor PrfB2, chloroplastic [Jatropha curcas]
20 Hb_007426_030 0.0739262477 - - PREDICTED: pentatricopeptide repeat-containing protein At2g34400 [Jatropha curcas]

Gene co-expression network

sample Hb_004109_090 Hb_004109_090 Hb_003175_010 Hb_003175_010 Hb_004109_090--Hb_003175_010 Hb_003929_160 Hb_003929_160 Hb_004109_090--Hb_003929_160 Hb_000409_020 Hb_000409_020 Hb_004109_090--Hb_000409_020 Hb_004724_200 Hb_004724_200 Hb_004109_090--Hb_004724_200 Hb_001818_090 Hb_001818_090 Hb_004109_090--Hb_001818_090 Hb_005663_060 Hb_005663_060 Hb_004109_090--Hb_005663_060 Hb_000808_270 Hb_000808_270 Hb_003175_010--Hb_000808_270 Hb_000926_280 Hb_000926_280 Hb_003175_010--Hb_000926_280 Hb_019280_040 Hb_019280_040 Hb_003175_010--Hb_019280_040 Hb_000030_300 Hb_000030_300 Hb_003175_010--Hb_000030_300 Hb_003766_040 Hb_003766_040 Hb_003175_010--Hb_003766_040 Hb_048937_040 Hb_048937_040 Hb_003175_010--Hb_048937_040 Hb_003001_120 Hb_003001_120 Hb_003929_160--Hb_003001_120 Hb_007380_070 Hb_007380_070 Hb_003929_160--Hb_007380_070 Hb_005539_350 Hb_005539_350 Hb_003929_160--Hb_005539_350 Hb_003929_160--Hb_005663_060 Hb_003929_160--Hb_000926_280 Hb_003206_070 Hb_003206_070 Hb_000409_020--Hb_003206_070 Hb_000898_040 Hb_000898_040 Hb_000409_020--Hb_000898_040 Hb_000409_020--Hb_005663_060 Hb_002687_110 Hb_002687_110 Hb_000409_020--Hb_002687_110 Hb_002016_110 Hb_002016_110 Hb_000409_020--Hb_002016_110 Hb_002030_030 Hb_002030_030 Hb_004724_200--Hb_002030_030 Hb_002811_360 Hb_002811_360 Hb_004724_200--Hb_002811_360 Hb_001301_200 Hb_001301_200 Hb_004724_200--Hb_001301_200 Hb_004724_200--Hb_048937_040 Hb_001199_020 Hb_001199_020 Hb_004724_200--Hb_001199_020 Hb_061090_010 Hb_061090_010 Hb_001818_090--Hb_061090_010 Hb_003032_040 Hb_003032_040 Hb_001818_090--Hb_003032_040 Hb_001818_090--Hb_005663_060 Hb_007441_120 Hb_007441_120 Hb_001818_090--Hb_007441_120 Hb_000579_140 Hb_000579_140 Hb_001818_090--Hb_000579_140 Hb_003092_040 Hb_003092_040 Hb_005663_060--Hb_003092_040 Hb_032202_190 Hb_032202_190 Hb_005663_060--Hb_032202_190 Hb_006922_100 Hb_006922_100 Hb_005663_060--Hb_006922_100 Hb_005663_060--Hb_007441_120 Hb_005663_060--Hb_002016_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.3753 11.6831 13.9904 15.6171 30.4539 37.7754
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.9176 27.6581 38.8581 17.7685 14.9589

CAGE analysis