Hb_004109_100

Information

Type -
Description -
Location Contig4109: 87568-88734
Sequence    

Annotation

kegg
ID tcc:TCM_032329
description Interactor of constitutive active rops 1 isoform 1
nr
ID XP_007022164.1
description Interactor of constitutive active rops 1 isoform 1 [Theobroma cacao]
swissprot
ID Q9M9F9
description Interactor of constitutive active ROPs 4 OS=Arabidopsis thaliana GN=ICR4 PE=1 SV=2
trembl
ID A0A061FGY2
description Interactor of constitutive active rops 1 isoform 1 OS=Theobroma cacao GN=TCM_032329 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_100 0.0 - - Interactor of constitutive active rops 1 isoform 1 [Theobroma cacao]
2 Hb_005568_140 0.0688886968 - - ATP binding protein, putative [Ricinus communis]
3 Hb_002918_220 0.0724929646 - - PREDICTED: uncharacterized protein LOC105138896 [Populus euphratica]
4 Hb_002243_030 0.0761487941 - - PREDICTED: 65-kDa microtubule-associated protein 3-like isoform X1 [Jatropha curcas]
5 Hb_003777_260 0.0901581016 - - PREDICTED: uncharacterized protein LOC105640927 isoform X4 [Jatropha curcas]
6 Hb_002170_060 0.0976836259 - - PREDICTED: mitogen-activated protein kinase-binding protein 1 [Jatropha curcas]
7 Hb_015299_040 0.0979850561 transcription factor TF Family: MYB PREDICTED: myb-related protein 308 [Jatropha curcas]
8 Hb_023344_100 0.0985656206 - - PREDICTED: subtilisin-like protease SBT1.2 [Jatropha curcas]
9 Hb_004422_030 0.0988469121 - - PREDICTED: serine/threonine-protein kinase SAPK7-like [Jatropha curcas]
10 Hb_007574_020 0.0989425183 - - PREDICTED: uncharacterized protein LOC105638146 [Jatropha curcas]
11 Hb_000340_550 0.1022011577 - - PREDICTED: rho GTPase-activating protein 2 [Jatropha curcas]
12 Hb_158845_010 0.1022771784 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor At1g16060 [Jatropha curcas]
13 Hb_001439_240 0.1033307854 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
14 Hb_002232_310 0.1061150281 - - PREDICTED: uncharacterized protein LOC105635987 [Jatropha curcas]
15 Hb_001571_080 0.1066028807 - - PREDICTED: non-specific lipid-transfer protein-like protein At5g64080 [Jatropha curcas]
16 Hb_003935_090 0.1089588825 - - PREDICTED: uncharacterized protein At4g38062 [Jatropha curcas]
17 Hb_001755_040 0.1093893836 - - PREDICTED: cyclin-A2-4-like isoform X1 [Jatropha curcas]
18 Hb_012753_150 0.1097550616 transcription factor TF Family: GRAS DELLA protein RGL1, putative [Ricinus communis]
19 Hb_010267_020 0.1106973565 - - diphosphoinositol polyphosphate phosphohydrolase, putative [Ricinus communis]
20 Hb_000830_010 0.1143102672 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004109_100 Hb_004109_100 Hb_005568_140 Hb_005568_140 Hb_004109_100--Hb_005568_140 Hb_002918_220 Hb_002918_220 Hb_004109_100--Hb_002918_220 Hb_002243_030 Hb_002243_030 Hb_004109_100--Hb_002243_030 Hb_003777_260 Hb_003777_260 Hb_004109_100--Hb_003777_260 Hb_002170_060 Hb_002170_060 Hb_004109_100--Hb_002170_060 Hb_015299_040 Hb_015299_040 Hb_004109_100--Hb_015299_040 Hb_005568_140--Hb_002918_220 Hb_001571_080 Hb_001571_080 Hb_005568_140--Hb_001571_080 Hb_005568_140--Hb_002170_060 Hb_010267_020 Hb_010267_020 Hb_005568_140--Hb_010267_020 Hb_004422_030 Hb_004422_030 Hb_005568_140--Hb_004422_030 Hb_002918_220--Hb_004422_030 Hb_002918_220--Hb_001571_080 Hb_001439_240 Hb_001439_240 Hb_002918_220--Hb_001439_240 Hb_002918_220--Hb_010267_020 Hb_023344_100 Hb_023344_100 Hb_002243_030--Hb_023344_100 Hb_002243_030--Hb_015299_040 Hb_001357_160 Hb_001357_160 Hb_002243_030--Hb_001357_160 Hb_002243_030--Hb_003777_260 Hb_002243_030--Hb_002170_060 Hb_000340_550 Hb_000340_550 Hb_003777_260--Hb_000340_550 Hb_005116_120 Hb_005116_120 Hb_003777_260--Hb_005116_120 Hb_181744_010 Hb_181744_010 Hb_003777_260--Hb_181744_010 Hb_003777_260--Hb_001439_240 Hb_005288_090 Hb_005288_090 Hb_003777_260--Hb_005288_090 Hb_008643_220 Hb_008643_220 Hb_002170_060--Hb_008643_220 Hb_000664_080 Hb_000664_080 Hb_002170_060--Hb_000664_080 Hb_002170_060--Hb_002918_220 Hb_158845_010 Hb_158845_010 Hb_015299_040--Hb_158845_010 Hb_000010_320 Hb_000010_320 Hb_015299_040--Hb_000010_320 Hb_074240_030 Hb_074240_030 Hb_015299_040--Hb_074240_030 Hb_015299_040--Hb_001357_160 Hb_054615_010 Hb_054615_010 Hb_015299_040--Hb_054615_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.19722 1.93656 31.7918 10.6212 0.154826 0.158279
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0839016 0.0989954 0.0612967 1.46807 4.70468

CAGE analysis