Hb_004109_110

Information

Type -
Description -
Location Contig4109: 91226-92617
Sequence    

Annotation

kegg
ID pop:POPTR_0001s38760g
description POPTRDRAFT_550316; dioxygenase family protein
nr
ID XP_002300430.1
description dioxygenase family protein [Populus trichocarpa]
swissprot
ID Q9SQ80
description Gibberellin 2-beta-dioxygenase 1 OS=Pisum sativum GN=GA2OX1 PE=1 SV=1
trembl
ID B9GGW7
description Dioxygenase family protein OS=Populus trichocarpa GN=POPTR_0001s38760g PE=3 SV=1
Gene Ontology
ID GO:0005506
description gibberellin 2-beta-dioxygenase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40634: 91155-92574
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_110 0.0 - - dioxygenase family protein [Populus trichocarpa]
2 Hb_006153_020 0.0906830736 - - vacuolar invertase [Manihot esculenta]
3 Hb_000047_010 0.0934563023 - - PREDICTED: expansin-like A1 [Jatropha curcas]
4 Hb_006002_020 0.1002550863 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
5 Hb_021576_160 0.1026656207 transcription factor TF Family: WRKY putative WRKY transcription factor family protein [Populus trichocarpa]
6 Hb_001518_030 0.1101662875 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
7 Hb_024650_010 0.116787513 - - PREDICTED: BAHD acyltransferase DCR [Jatropha curcas]
8 Hb_026048_030 0.1181930091 - - conserved hypothetical protein [Ricinus communis]
9 Hb_004324_100 0.1193426716 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
10 Hb_002400_040 0.1201131227 - - PREDICTED: uncharacterized protein LOC105637633 [Jatropha curcas]
11 Hb_000418_060 0.1228499428 - - PREDICTED: probable ribose-5-phosphate isomerase 2 [Jatropha curcas]
12 Hb_000028_330 0.124239775 - - PREDICTED: mitogen-activated protein kinase kinase 9-like [Pyrus x bretschneideri]
13 Hb_097634_010 0.1267232594 - - PREDICTED: UDP-glucuronate 4-epimerase 1 [Jatropha curcas]
14 Hb_010417_110 0.1269220104 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005946_200 0.1274953838 - - hypothetical protein POPTR_0006s16210g [Populus trichocarpa]
16 Hb_000892_030 0.1284248536 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
17 Hb_001221_050 0.1286537792 - - PREDICTED: probable inactive leucine-rich repeat receptor-like protein kinase At3g03770 [Jatropha curcas]
18 Hb_001610_070 0.1286970147 - - hypothetical protein MIMGU_mgv1a022867mg [Erythranthe guttata]
19 Hb_029622_090 0.1305125015 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor 2-like [Jatropha curcas]
20 Hb_000024_020 0.1310325391 - - PREDICTED: uncharacterized protein LOC105636896 [Jatropha curcas]

Gene co-expression network

sample Hb_004109_110 Hb_004109_110 Hb_006153_020 Hb_006153_020 Hb_004109_110--Hb_006153_020 Hb_000047_010 Hb_000047_010 Hb_004109_110--Hb_000047_010 Hb_006002_020 Hb_006002_020 Hb_004109_110--Hb_006002_020 Hb_021576_160 Hb_021576_160 Hb_004109_110--Hb_021576_160 Hb_001518_030 Hb_001518_030 Hb_004109_110--Hb_001518_030 Hb_024650_010 Hb_024650_010 Hb_004109_110--Hb_024650_010 Hb_001221_050 Hb_001221_050 Hb_006153_020--Hb_001221_050 Hb_005946_200 Hb_005946_200 Hb_006153_020--Hb_005946_200 Hb_006153_020--Hb_021576_160 Hb_006153_020--Hb_006002_020 Hb_001333_030 Hb_001333_030 Hb_006153_020--Hb_001333_030 Hb_000892_030 Hb_000892_030 Hb_000047_010--Hb_000892_030 Hb_000418_060 Hb_000418_060 Hb_000047_010--Hb_000418_060 Hb_000047_010--Hb_006002_020 Hb_002400_040 Hb_002400_040 Hb_000047_010--Hb_002400_040 Hb_000047_010--Hb_006153_020 Hb_006002_020--Hb_000418_060 Hb_002725_080 Hb_002725_080 Hb_006002_020--Hb_002725_080 Hb_010417_110 Hb_010417_110 Hb_006002_020--Hb_010417_110 Hb_003427_020 Hb_003427_020 Hb_021576_160--Hb_003427_020 Hb_021576_160--Hb_001221_050 Hb_021576_160--Hb_001333_030 Hb_021576_160--Hb_005946_200 Hb_029622_090 Hb_029622_090 Hb_021576_160--Hb_029622_090 Hb_026048_030 Hb_026048_030 Hb_001518_030--Hb_026048_030 Hb_001518_030--Hb_024650_010 Hb_000028_330 Hb_000028_330 Hb_001518_030--Hb_000028_330 Hb_003435_040 Hb_003435_040 Hb_001518_030--Hb_003435_040 Hb_001310_080 Hb_001310_080 Hb_001518_030--Hb_001310_080 Hb_006736_040 Hb_006736_040 Hb_001518_030--Hb_006736_040 Hb_024650_010--Hb_006736_040 Hb_024650_010--Hb_003435_040 Hb_024650_010--Hb_026048_030 Hb_024650_010--Hb_000028_330 Hb_024650_010--Hb_002725_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 12.2155 8.11129 13.2933 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0423437 0.532917 0.0618449 0.600823 3.43954

CAGE analysis