Hb_004109_140

Information

Type -
Description -
Location Contig4109: 116749-118927
Sequence    

Annotation

kegg
ID rcu:RCOM_0477780
description hypothetical protein
nr
ID XP_002532825.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID B9T3K6
description CASP-like protein 2A1 OS=Ricinus communis GN=RCOM_0477780 PE=2 SV=1
trembl
ID A0A067E5W9
description CASP-like protein OS=Citrus sinensis GN=CISIN_1g028477mg PE=3 SV=1
Gene Ontology
ID GO:0005886
description casp-like protein 2a1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40641: 116752-118942
cDNA
(Sanger)
(ID:Location)		 004_E05.ab1: 116848-118919 , 007_P14.ab1: 116834-118919 , 026_B16.ab1: 116886-118940 , 034_B07.ab1: 116828-118942 , 038_G12.ab1: 116898-118965 , 043_F08.ab1: 116832-118942 , 048_P08.ab1: 116830-118945 , 050_B06.ab1: 117065-118942 , 051_L04.ab1: 116958-118942 , 052_C07.ab1: 116877-118942

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_140 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_005305_140 0.050858608 - - unknown [Populus trichocarpa]
3 Hb_000834_170 0.0669193176 - - polygalacturonase, putative [Ricinus communis]
4 Hb_005227_030 0.0737415731 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic [Jatropha curcas]
5 Hb_000386_010 0.0769452655 - - conserved hypothetical protein [Ricinus communis]
6 Hb_001864_050 0.0802695539 - - chloroplast oxygen-evolving enhancer protein [Manihot esculenta]
7 Hb_000483_470 0.0813654751 - - PREDICTED: zeaxanthin epoxidase, chloroplastic-like isoform X1 [Jatropha curcas]
8 Hb_002025_220 0.0832327025 transcription factor TF Family: C2H2 zinc finger protein, putative [Ricinus communis]
9 Hb_001369_340 0.0889609722 - - Peroxisomal membrane protein 11B [Theobroma cacao]
10 Hb_000025_700 0.0891323168 - - PREDICTED: serine--glyoxylate aminotransferase [Nelumbo nucifera]
11 Hb_000445_270 0.0896217763 - - ATP binding protein, putative [Ricinus communis]
12 Hb_002010_030 0.0901058284 - - Phytosulfokine receptor precursor, putative [Ricinus communis]
13 Hb_003767_060 0.0913149426 - - PREDICTED: serine/threonine-protein kinase CDL1 [Jatropha curcas]
14 Hb_006106_010 0.0960154828 transcription factor TF Family: TCP transcription factor, putative [Ricinus communis]
15 Hb_078954_030 0.0971613776 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000482_160 0.1040647865 - - hypothetical protein JCGZ_07670 [Jatropha curcas]
17 Hb_003777_090 0.1055087024 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
18 Hb_000088_230 0.1081352677 - - hypothetical protein POPTR_0013s11340g [Populus trichocarpa]
19 Hb_004346_050 0.1083167389 - - PREDICTED: ABC transporter G family member 22 [Jatropha curcas]
20 Hb_001338_120 0.1086656478 - - hypothetical chloroplast RF68 (chloroplast) [Ipomoea batatas]

Gene co-expression network

sample Hb_004109_140 Hb_004109_140 Hb_005305_140 Hb_005305_140 Hb_004109_140--Hb_005305_140 Hb_000834_170 Hb_000834_170 Hb_004109_140--Hb_000834_170 Hb_005227_030 Hb_005227_030 Hb_004109_140--Hb_005227_030 Hb_000386_010 Hb_000386_010 Hb_004109_140--Hb_000386_010 Hb_001864_050 Hb_001864_050 Hb_004109_140--Hb_001864_050 Hb_000483_470 Hb_000483_470 Hb_004109_140--Hb_000483_470 Hb_005305_140--Hb_000386_010 Hb_005305_140--Hb_001864_050 Hb_002025_220 Hb_002025_220 Hb_005305_140--Hb_002025_220 Hb_001662_090 Hb_001662_090 Hb_005305_140--Hb_001662_090 Hb_005305_140--Hb_000834_170 Hb_011930_060 Hb_011930_060 Hb_000834_170--Hb_011930_060 Hb_000834_170--Hb_002025_220 Hb_000834_170--Hb_005227_030 Hb_002010_030 Hb_002010_030 Hb_000834_170--Hb_002010_030 Hb_005227_030--Hb_000386_010 Hb_005227_030--Hb_005305_140 Hb_005888_060 Hb_005888_060 Hb_005227_030--Hb_005888_060 Hb_001953_110 Hb_001953_110 Hb_005227_030--Hb_001953_110 Hb_023904_010 Hb_023904_010 Hb_005227_030--Hb_023904_010 Hb_000928_100 Hb_000928_100 Hb_000386_010--Hb_000928_100 Hb_022167_010 Hb_022167_010 Hb_000386_010--Hb_022167_010 Hb_000386_010--Hb_005888_060 Hb_000386_010--Hb_001662_090 Hb_002805_200 Hb_002805_200 Hb_001864_050--Hb_002805_200 Hb_001338_120 Hb_001338_120 Hb_001864_050--Hb_001338_120 Hb_001006_150 Hb_001006_150 Hb_001864_050--Hb_001006_150 Hb_000482_160 Hb_000482_160 Hb_001864_050--Hb_000482_160 Hb_000281_120 Hb_000281_120 Hb_001864_050--Hb_000281_120 Hb_000294_020 Hb_000294_020 Hb_000483_470--Hb_000294_020 Hb_003777_090 Hb_003777_090 Hb_000483_470--Hb_003777_090 Hb_000483_470--Hb_000928_100 Hb_060534_010 Hb_060534_010 Hb_000483_470--Hb_060534_010 Hb_000025_700 Hb_000025_700 Hb_000483_470--Hb_000025_700
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0254377 46.6517 216.788 33.6252 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0583839 0 0 1.42594 195.068

CAGE analysis