Hb_004109_150

Information

Type -
Description -
Location Contig4109: 120353-121662
Sequence    

Annotation

kegg
ID rcu:RCOM_0477560
description glutathione s-transferase, putative (EC:4.4.1.5)
nr
ID AEF79856.1
description glutathione-S-transferase tau 1 [Hevea brasiliensis]
swissprot
ID P49332
description Probable glutathione S-transferase parC OS=Nicotiana tabacum GN=PARC PE=2 SV=1
trembl
ID K9K1E4
description Glutathione-S-transferase tau 1 OS=Hevea brasiliensis GN=GSTU1 PE=2 SV=1
Gene Ontology
ID GO:0004364
description probable glutathione s-transferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40642: 120460-121590
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_150 0.0 - - glutathione-S-transferase tau 1 [Hevea brasiliensis]
2 Hb_002030_100 0.0994324246 - - PREDICTED: putative clathrin assembly protein At4g40080 [Jatropha curcas]
3 Hb_000156_080 0.1058070173 - - Potassium channel KAT2, putative [Ricinus communis]
4 Hb_002783_130 0.1140389172 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Jatropha curcas]
5 Hb_006358_030 0.1150630045 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
6 Hb_000656_260 0.1269542321 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
7 Hb_036492_020 0.1271327251 - - PREDICTED: disease resistance protein RPM1 [Jatropha curcas]
8 Hb_070613_010 0.1282029589 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
9 Hb_000402_180 0.1316968871 - - PREDICTED: uncharacterized protein LOC105644975 [Jatropha curcas]
10 Hb_012799_040 0.1335682037 - - PREDICTED: transmembrane ascorbate ferrireductase 1 [Jatropha curcas]
11 Hb_152414_010 0.14022458 desease resistance Gene Name: NB-ARC hypothetical protein PRUPE_ppa024232mg [Prunus persica]
12 Hb_003073_040 0.1404987925 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.6-like isoform X2 [Populus euphratica]
13 Hb_001660_130 0.1405632136 - - PREDICTED: serine/threonine-protein kinase-like protein CCR4 [Jatropha curcas]
14 Hb_004879_030 0.1409741129 - - PREDICTED: uncharacterized protein LOC105124685 [Populus euphratica]
15 Hb_003929_040 0.1439742281 - - PREDICTED: glycerophosphodiester phosphodiesterase protein kinase domain-containing GDPDL2-like isoform X2 [Jatropha curcas]
16 Hb_002301_340 0.1488512462 transcription factor TF Family: B3 leafy cotyledon 2 [Ricinus communis]
17 Hb_012814_030 0.1490576603 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1 [Jatropha curcas]
18 Hb_000926_210 0.1506522733 - - LIM and calponin domains-containing protein 1, putative [Theobroma cacao]
19 Hb_010180_050 0.1533682891 - - PREDICTED: CBL-interacting protein kinase 2 [Jatropha curcas]
20 Hb_001221_070 0.1534448889 - - PREDICTED: calcium-binding protein CML38-like [Jatropha curcas]

Gene co-expression network

sample Hb_004109_150 Hb_004109_150 Hb_002030_100 Hb_002030_100 Hb_004109_150--Hb_002030_100 Hb_000156_080 Hb_000156_080 Hb_004109_150--Hb_000156_080 Hb_002783_130 Hb_002783_130 Hb_004109_150--Hb_002783_130 Hb_006358_030 Hb_006358_030 Hb_004109_150--Hb_006358_030 Hb_000656_260 Hb_000656_260 Hb_004109_150--Hb_000656_260 Hb_036492_020 Hb_036492_020 Hb_004109_150--Hb_036492_020 Hb_002030_100--Hb_006358_030 Hb_002030_100--Hb_036492_020 Hb_000032_590 Hb_000032_590 Hb_002030_100--Hb_000032_590 Hb_002030_100--Hb_000656_260 Hb_003073_040 Hb_003073_040 Hb_002030_100--Hb_003073_040 Hb_011457_080 Hb_011457_080 Hb_000156_080--Hb_011457_080 Hb_004218_080 Hb_004218_080 Hb_000156_080--Hb_004218_080 Hb_000402_180 Hb_000402_180 Hb_000156_080--Hb_000402_180 Hb_000156_080--Hb_002030_100 Hb_007193_030 Hb_007193_030 Hb_000156_080--Hb_007193_030 Hb_001660_130 Hb_001660_130 Hb_002783_130--Hb_001660_130 Hb_070613_010 Hb_070613_010 Hb_002783_130--Hb_070613_010 Hb_000418_060 Hb_000418_060 Hb_002783_130--Hb_000418_060 Hb_006002_020 Hb_006002_020 Hb_002783_130--Hb_006002_020 Hb_134022_010 Hb_134022_010 Hb_002783_130--Hb_134022_010 Hb_006358_030--Hb_036492_020 Hb_006358_030--Hb_000032_590 Hb_152414_010 Hb_152414_010 Hb_006358_030--Hb_152414_010 Hb_005772_020 Hb_005772_020 Hb_006358_030--Hb_005772_020 Hb_004879_030 Hb_004879_030 Hb_006358_030--Hb_004879_030 Hb_012799_040 Hb_012799_040 Hb_000656_260--Hb_012799_040 Hb_000656_260--Hb_036492_020 Hb_029584_110 Hb_029584_110 Hb_000656_260--Hb_029584_110 Hb_000656_260--Hb_006358_030 Hb_000656_260--Hb_000402_180 Hb_002999_130 Hb_002999_130 Hb_000656_260--Hb_002999_130 Hb_036492_020--Hb_000402_180 Hb_036492_020--Hb_134022_010 Hb_003929_040 Hb_003929_040 Hb_036492_020--Hb_003929_040 Hb_036492_020--Hb_152414_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0456641 33.38 24.1424 15.0578 0.0584236 0.365536
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.557433 0.365373 0.135099 0.0440084 20.2038

CAGE analysis