Hb_004109_200

Information

Type -
Description -
Location Contig4109: 156272-169886
Sequence    

Annotation

kegg
ID tcc:TCM_006013
description Plastid transcriptionally active 9, putative
nr
ID XP_012084340.1
description PREDICTED: protein OSB2, chloroplastic-like [Jatropha curcas]
swissprot
ID Q8GXH3
description Protein OSB2, chloroplastic OS=Arabidopsis thaliana GN=OSB2 PE=1 SV=2
trembl
ID A0A067JY20
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19727 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40646: 145982-155683 , PASA_asmbl_40647: 169378-169734 , PASA_asmbl_40648: 156318-157326 , PASA_asmbl_40649: 156453-168796 , PASA_asmbl_40650: 156721-170010
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_200 0.0 - - PREDICTED: protein OSB2, chloroplastic-like [Jatropha curcas]
2 Hb_010381_070 0.0670910819 - - PREDICTED: protein STU1-like [Jatropha curcas]
3 Hb_000139_410 0.0684255417 transcription factor TF Family: NF-YC hypothetical protein POPTR_0010s03730g [Populus trichocarpa]
4 Hb_021254_030 0.0686978681 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]
5 Hb_000483_350 0.072817142 - - PREDICTED: uncharacterized protein LOC105632381 [Jatropha curcas]
6 Hb_002375_020 0.0741751012 - - PREDICTED: ankyrin repeat domain-containing protein 65-like [Jatropha curcas]
7 Hb_005306_110 0.0756454303 - - casein kinase, putative [Ricinus communis]
8 Hb_002762_060 0.0769485721 - - PREDICTED: diphthine methyltransferase homolog [Jatropha curcas]
9 Hb_001584_330 0.0773818485 - - PREDICTED: shaggy-related protein kinase alpha [Jatropha curcas]
10 Hb_004055_010 0.0802659741 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
11 Hb_004221_010 0.0814445808 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
12 Hb_001913_010 0.0817933853 - - phosphatidylinositol n-acetylglucosaminyltransferase subunit p, putative [Ricinus communis]
13 Hb_004722_060 0.083589644 - - PREDICTED: protein CLP1 homolog [Jatropha curcas]
14 Hb_001623_420 0.0837806296 - - nucleotide binding protein, putative [Ricinus communis]
15 Hb_000621_080 0.0843021008 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000078_180 0.0857117581 - - PREDICTED: uncharacterized protein LOC105641312 [Jatropha curcas]
17 Hb_001511_020 0.085896857 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
18 Hb_001138_050 0.0862209408 - - hypothetical protein JCGZ_15696 [Jatropha curcas]
19 Hb_086639_070 0.0864482016 transcription factor TF Family: bHLH PREDICTED: transcription factor BIM2 [Jatropha curcas]
20 Hb_001248_050 0.0870616237 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]

Gene co-expression network

sample Hb_004109_200 Hb_004109_200 Hb_010381_070 Hb_010381_070 Hb_004109_200--Hb_010381_070 Hb_000139_410 Hb_000139_410 Hb_004109_200--Hb_000139_410 Hb_021254_030 Hb_021254_030 Hb_004109_200--Hb_021254_030 Hb_000483_350 Hb_000483_350 Hb_004109_200--Hb_000483_350 Hb_002375_020 Hb_002375_020 Hb_004109_200--Hb_002375_020 Hb_005306_110 Hb_005306_110 Hb_004109_200--Hb_005306_110 Hb_010381_070--Hb_000139_410 Hb_010381_070--Hb_002375_020 Hb_001623_420 Hb_001623_420 Hb_010381_070--Hb_001623_420 Hb_000754_060 Hb_000754_060 Hb_010381_070--Hb_000754_060 Hb_001584_330 Hb_001584_330 Hb_010381_070--Hb_001584_330 Hb_005000_210 Hb_005000_210 Hb_000139_410--Hb_005000_210 Hb_000139_410--Hb_001584_330 Hb_000139_410--Hb_001623_420 Hb_002150_080 Hb_002150_080 Hb_000139_410--Hb_002150_080 Hb_001195_690 Hb_001195_690 Hb_021254_030--Hb_001195_690 Hb_021254_030--Hb_010381_070 Hb_021254_030--Hb_000139_410 Hb_009615_150 Hb_009615_150 Hb_021254_030--Hb_009615_150 Hb_003994_180 Hb_003994_180 Hb_021254_030--Hb_003994_180 Hb_000554_020 Hb_000554_020 Hb_000483_350--Hb_000554_020 Hb_004055_010 Hb_004055_010 Hb_000483_350--Hb_004055_010 Hb_004221_010 Hb_004221_010 Hb_000483_350--Hb_004221_010 Hb_009382_020 Hb_009382_020 Hb_000483_350--Hb_009382_020 Hb_000085_270 Hb_000085_270 Hb_000483_350--Hb_000085_270 Hb_000923_020 Hb_000923_020 Hb_002375_020--Hb_000923_020 Hb_001301_160 Hb_001301_160 Hb_002375_020--Hb_001301_160 Hb_002027_260 Hb_002027_260 Hb_002375_020--Hb_002027_260 Hb_006332_020 Hb_006332_020 Hb_002375_020--Hb_006332_020 Hb_033153_050 Hb_033153_050 Hb_005306_110--Hb_033153_050 Hb_005306_110--Hb_001584_330 Hb_005306_110--Hb_001623_420 Hb_000943_070 Hb_000943_070 Hb_005306_110--Hb_000943_070 Hb_000120_950 Hb_000120_950 Hb_005306_110--Hb_000120_950 Hb_003642_060 Hb_003642_060 Hb_005306_110--Hb_003642_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.677 9.84409 4.05112 4.13382 12.0227 16.4172
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.4096 13.79 12.4132 4.52208 2.35064

CAGE analysis