Hb_004109_220

Information

Type -
Description -
Location Contig4109: 211213-222038
Sequence    

Annotation

kegg
ID rcu:RCOM_0564770
description RNA-binding protein, putative
nr
ID XP_011006710.1
description PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
swissprot
ID Q9LRR6
description Polyadenylate-binding protein-interacting protein 9 OS=Arabidopsis thaliana GN=CID9 PE=3 SV=1
trembl
ID A0A067JCT6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04523 PE=4 SV=1
Gene Ontology
ID GO:0000166
description polyadenylate-binding protein-interacting protein 9-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40654: 211307-222147
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_220 0.0 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
2 Hb_149985_010 0.0452377666 - - PREDICTED: transcription initiation factor IIB-2 [Cucumis sativus]
3 Hb_012022_040 0.0561020509 - - Protein SIS1, putative [Ricinus communis]
4 Hb_000288_030 0.0575326703 - - PREDICTED: syntaxin-32 [Jatropha curcas]
5 Hb_000359_060 0.0618902821 - - PREDICTED: WD repeat-containing protein 26-like [Jatropha curcas]
6 Hb_000928_070 0.0645092336 - - PREDICTED: maltose excess protein 1, chloroplastic-like [Jatropha curcas]
7 Hb_001511_060 0.0653113312 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
8 Hb_004078_040 0.066358945 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
9 Hb_003582_060 0.0665983285 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
10 Hb_000260_350 0.068217403 - - conserved hypothetical protein [Ricinus communis]
11 Hb_001016_120 0.070577399 - - PREDICTED: 3-dehydroquinate synthase, chloroplastic [Jatropha curcas]
12 Hb_000173_410 0.0715779575 - - PREDICTED: BI1-like protein [Jatropha curcas]
13 Hb_001300_150 0.0739302325 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
14 Hb_000003_230 0.0747265358 - - PREDICTED: FAD synthetase 2, chloroplastic [Jatropha curcas]
15 Hb_008841_020 0.075027849 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105631075 isoform X1 [Jatropha curcas]
16 Hb_168978_010 0.0751174202 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
17 Hb_000349_260 0.0755449776 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
18 Hb_005054_110 0.0762873219 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
19 Hb_003025_100 0.0764417284 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
20 Hb_000220_100 0.0765151441 - - PREDICTED: uncharacterized PKHD-type hydroxylase At1g22950 [Jatropha curcas]

Gene co-expression network

sample Hb_004109_220 Hb_004109_220 Hb_149985_010 Hb_149985_010 Hb_004109_220--Hb_149985_010 Hb_012022_040 Hb_012022_040 Hb_004109_220--Hb_012022_040 Hb_000288_030 Hb_000288_030 Hb_004109_220--Hb_000288_030 Hb_000359_060 Hb_000359_060 Hb_004109_220--Hb_000359_060 Hb_000928_070 Hb_000928_070 Hb_004109_220--Hb_000928_070 Hb_001511_060 Hb_001511_060 Hb_004109_220--Hb_001511_060 Hb_000574_450 Hb_000574_450 Hb_149985_010--Hb_000574_450 Hb_149985_010--Hb_000359_060 Hb_001016_120 Hb_001016_120 Hb_149985_010--Hb_001016_120 Hb_005054_110 Hb_005054_110 Hb_149985_010--Hb_005054_110 Hb_000049_210 Hb_000049_210 Hb_149985_010--Hb_000049_210 Hb_000856_010 Hb_000856_010 Hb_012022_040--Hb_000856_010 Hb_001278_100 Hb_001278_100 Hb_012022_040--Hb_001278_100 Hb_012022_040--Hb_149985_010 Hb_000221_190 Hb_000221_190 Hb_012022_040--Hb_000221_190 Hb_012022_040--Hb_000928_070 Hb_000288_030--Hb_000928_070 Hb_000003_230 Hb_000003_230 Hb_000288_030--Hb_000003_230 Hb_000925_130 Hb_000925_130 Hb_000288_030--Hb_000925_130 Hb_003582_060 Hb_003582_060 Hb_000288_030--Hb_003582_060 Hb_000288_030--Hb_012022_040 Hb_000890_150 Hb_000890_150 Hb_000359_060--Hb_000890_150 Hb_000220_100 Hb_000220_100 Hb_000359_060--Hb_000220_100 Hb_011218_090 Hb_011218_090 Hb_000359_060--Hb_011218_090 Hb_168978_010 Hb_168978_010 Hb_000359_060--Hb_168978_010 Hb_000173_410 Hb_000173_410 Hb_000359_060--Hb_000173_410 Hb_001541_120 Hb_001541_120 Hb_000928_070--Hb_001541_120 Hb_000928_070--Hb_000856_010 Hb_000928_070--Hb_003582_060 Hb_000140_090 Hb_000140_090 Hb_000928_070--Hb_000140_090 Hb_000260_350 Hb_000260_350 Hb_001511_060--Hb_000260_350 Hb_001511_060--Hb_168978_010 Hb_022115_020 Hb_022115_020 Hb_001511_060--Hb_022115_020 Hb_000349_260 Hb_000349_260 Hb_001511_060--Hb_000349_260 Hb_001511_060--Hb_000359_060 Hb_003994_230 Hb_003994_230 Hb_001511_060--Hb_003994_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.43526 5.14274 6.48948 10.2684 4.76528 4.42656
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.55149 9.91754 9.18822 7.20432 7.17346

CAGE analysis