Hb_004109_250

Information

Type -
Description -
Location Contig4109: 252200-253354
Sequence    

Annotation

kegg
ID pop:POPTR_0001s42970g
description Photosystem II 10 kDa polypeptide family protein
nr
ID ABK96671.1
description unknown [Populus trichocarpa x Populus deltoides]
swissprot
ID P06183
description Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1
trembl
ID A9PJW8
description Putative uncharacterized protein OS=Populus trichocarpa x Populus deltoides PE=2 SV=1
Gene Ontology
ID GO:0009654
description photosystem ii 10 kda chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40664: 252202-253362 , PASA_asmbl_40665: 252202-253252
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_250 0.0 - - unknown [Populus trichocarpa x Populus deltoides]
2 Hb_003077_010 0.1478694998 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit O, chloroplastic isoform X1 [Jatropha curcas]
3 Hb_000494_010 0.1518466781 transcription factor TF Family: HB hypothetical protein POPTR_0014s04460g [Populus trichocarpa]
4 Hb_000349_170 0.1536063206 - - PREDICTED: geraniol 8-hydroxylase-like [Jatropha curcas]
5 Hb_000110_240 0.1652890703 - - PREDICTED: uncharacterized protein LOC105642006 isoform X3 [Jatropha curcas]
6 Hb_000500_330 0.1662924084 - - PREDICTED: bidirectional sugar transporter SWEET2a-like [Jatropha curcas]
7 Hb_000388_040 0.1693684104 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
8 Hb_003767_030 0.1785302556 - - PREDICTED: probable calcium-binding protein CML23 [Jatropha curcas]
9 Hb_165330_010 0.1795935406 - - BnaUnng00840D [Brassica napus]
10 Hb_104014_010 0.1829877687 - - PREDICTED: probable receptor-like protein kinase At5g39020 isoform X2 [Jatropha curcas]
11 Hb_136441_010 0.184108142 - - PREDICTED: receptor-like protein kinase [Jatropha curcas]
12 Hb_163140_010 0.1841505439 transcription factor TF Family: MYB PREDICTED: myb-related protein Myb4-like [Jatropha curcas]
13 Hb_149985_030 0.1842116743 - - PREDICTED: zeatin O-glucosyltransferase-like [Jatropha curcas]
14 Hb_000264_160 0.185656183 - - PREDICTED: CBS domain-containing protein CBSX5-like [Jatropha curcas]
15 Hb_012084_010 0.1870015266 - - cold regulated protein [Manihot esculenta]
16 Hb_046590_010 0.1872023334 - - Cycloeucalenol cycloisomerase, putative [Ricinus communis]
17 Hb_001606_040 0.1880795465 - - Rho GDP-dissociation inhibitor, putative [Ricinus communis]
18 Hb_001579_190 0.1881478723 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002218_050 0.188313174 - - SSXT family protein isoform 2, partial [Theobroma cacao]
20 Hb_001913_070 0.1884408649 - - PREDICTED: caffeoylshikimate esterase-like [Jatropha curcas]

Gene co-expression network

sample Hb_004109_250 Hb_004109_250 Hb_003077_010 Hb_003077_010 Hb_004109_250--Hb_003077_010 Hb_000494_010 Hb_000494_010 Hb_004109_250--Hb_000494_010 Hb_000349_170 Hb_000349_170 Hb_004109_250--Hb_000349_170 Hb_000110_240 Hb_000110_240 Hb_004109_250--Hb_000110_240 Hb_000500_330 Hb_000500_330 Hb_004109_250--Hb_000500_330 Hb_000388_040 Hb_000388_040 Hb_004109_250--Hb_000388_040 Hb_001606_040 Hb_001606_040 Hb_003077_010--Hb_001606_040 Hb_001123_340 Hb_001123_340 Hb_003077_010--Hb_001123_340 Hb_104014_010 Hb_104014_010 Hb_003077_010--Hb_104014_010 Hb_089736_010 Hb_089736_010 Hb_003077_010--Hb_089736_010 Hb_001218_060 Hb_001218_060 Hb_003077_010--Hb_001218_060 Hb_002121_030 Hb_002121_030 Hb_003077_010--Hb_002121_030 Hb_005116_130 Hb_005116_130 Hb_000494_010--Hb_005116_130 Hb_000494_010--Hb_000110_240 Hb_046590_010 Hb_046590_010 Hb_000494_010--Hb_046590_010 Hb_001579_190 Hb_001579_190 Hb_000494_010--Hb_001579_190 Hb_000494_010--Hb_003077_010 Hb_000494_010--Hb_000500_330 Hb_149985_030 Hb_149985_030 Hb_000349_170--Hb_149985_030 Hb_005695_070 Hb_005695_070 Hb_000349_170--Hb_005695_070 Hb_001913_070 Hb_001913_070 Hb_000349_170--Hb_001913_070 Hb_022406_010 Hb_022406_010 Hb_000349_170--Hb_022406_010 Hb_003767_030 Hb_003767_030 Hb_000349_170--Hb_003767_030 Hb_000349_170--Hb_000388_040 Hb_000110_240--Hb_005116_130 Hb_000110_240--Hb_000500_330 Hb_000110_240--Hb_046590_010 Hb_000110_240--Hb_001579_190 Hb_001442_050 Hb_001442_050 Hb_000110_240--Hb_001442_050 Hb_004846_230 Hb_004846_230 Hb_000500_330--Hb_004846_230 Hb_000028_150 Hb_000028_150 Hb_000500_330--Hb_000028_150 Hb_000500_330--Hb_005116_130 Hb_000500_330--Hb_046590_010 Hb_000388_040--Hb_003767_030 Hb_012753_150 Hb_012753_150 Hb_000388_040--Hb_012753_150 Hb_002218_050 Hb_002218_050 Hb_000388_040--Hb_002218_050 Hb_010267_020 Hb_010267_020 Hb_000388_040--Hb_010267_020 Hb_007441_290 Hb_007441_290 Hb_000388_040--Hb_007441_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.12248 18.2071 126.504 13.2922 4.18815 1.05743
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.8526 0.191399 0 0.158311 21.0182

CAGE analysis