Hb_004109_280

Information

Type -
Description -
Location Contig4109: 269246-273395
Sequence    

Annotation

kegg
ID pop:POPTR_0003s21820g
description POPTRDRAFT_555276; ENOYL-ACP REDUCTASE 1 family protein
nr
ID XP_011025228.1
description PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
swissprot
ID Q9SLA8
description Enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic OS=Arabidopsis thaliana GN=MOD1 PE=1 SV=1
trembl
ID B9GYV3
description ENOYL-ACP REDUCTASE 1 family protein OS=Populus trichocarpa GN=POPTR_0003s21820g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40668: 274038-274161
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_280 0.0 - - PREDICTED: enoyl-[acyl-carrier-protein] reductase [NADH], chloroplastic-like [Populus euphratica]
2 Hb_002997_080 0.061607001 - - PREDICTED: uncharacterized protein LOC105631115 [Jatropha curcas]
3 Hb_009545_080 0.0618149566 - - hypothetical protein POPTR_0008s15400g [Populus trichocarpa]
4 Hb_000260_100 0.068358058 - - conserved hypothetical protein [Ricinus communis]
5 Hb_002272_130 0.0739724084 - - PREDICTED: DNA excision repair protein ERCC-1 [Jatropha curcas]
6 Hb_027472_120 0.0785886637 - - PREDICTED: thiosulfate/3-mercaptopyruvate sulfurtransferase 1, mitochondrial isoform X1 [Jatropha curcas]
7 Hb_000883_020 0.0794964095 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
8 Hb_000062_370 0.0795228929 - - beta-ketoacyl-ACP reductase [Vernicia fordii]
9 Hb_004007_220 0.0799766286 - - PREDICTED: casein kinase II subunit alpha [Jatropha curcas]
10 Hb_002918_030 0.0803971795 - - PREDICTED: dol-P-Glc:Glc(2)Man(9)GlcNAc(2)-PP-Dol alpha-1,2-glucosyltransferase isoform X1 [Jatropha curcas]
11 Hb_000331_110 0.0806540116 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
12 Hb_000230_560 0.0819822671 - - PREDICTED: UPF0613 protein PB24D3.06c [Jatropha curcas]
13 Hb_003878_110 0.0820288787 - - PREDICTED: uncharacterized protein LOC105637024 [Jatropha curcas]
14 Hb_000804_040 0.0832183834 - - protein with unknown function [Ricinus communis]
15 Hb_032986_010 0.0835564257 - - Nicotinate-nucleotide pyrophosphorylase [carboxylating], putative [Ricinus communis]
16 Hb_000236_240 0.0841159435 - - Pre-mRNA-splicing factor cwc15, putative [Ricinus communis]
17 Hb_008642_040 0.0853489577 - - PREDICTED: nucleolar GTP-binding protein 1 isoform X2 [Jatropha curcas]
18 Hb_001329_130 0.0870720675 - - conserved hypothetical protein [Ricinus communis]
19 Hb_065500_060 0.0873228533 - - PREDICTED: uncharacterized protein LOC105633723 [Jatropha curcas]
20 Hb_005288_150 0.0880656466 - - PREDICTED: casein kinase I-like isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_004109_280 Hb_004109_280 Hb_002997_080 Hb_002997_080 Hb_004109_280--Hb_002997_080 Hb_009545_080 Hb_009545_080 Hb_004109_280--Hb_009545_080 Hb_000260_100 Hb_000260_100 Hb_004109_280--Hb_000260_100 Hb_002272_130 Hb_002272_130 Hb_004109_280--Hb_002272_130 Hb_027472_120 Hb_027472_120 Hb_004109_280--Hb_027472_120 Hb_000883_020 Hb_000883_020 Hb_004109_280--Hb_000883_020 Hb_000230_560 Hb_000230_560 Hb_002997_080--Hb_000230_560 Hb_002997_080--Hb_000260_100 Hb_002997_080--Hb_000883_020 Hb_008511_130 Hb_008511_130 Hb_002997_080--Hb_008511_130 Hb_032986_010 Hb_032986_010 Hb_002997_080--Hb_032986_010 Hb_004007_220 Hb_004007_220 Hb_002997_080--Hb_004007_220 Hb_009545_080--Hb_000883_020 Hb_009545_080--Hb_002997_080 Hb_009545_080--Hb_000230_560 Hb_000212_330 Hb_000212_330 Hb_009545_080--Hb_000212_330 Hb_009545_080--Hb_032986_010 Hb_005288_150 Hb_005288_150 Hb_000260_100--Hb_005288_150 Hb_000236_240 Hb_000236_240 Hb_000260_100--Hb_000236_240 Hb_001329_130 Hb_001329_130 Hb_000260_100--Hb_001329_130 Hb_000260_100--Hb_000230_560 Hb_007007_060 Hb_007007_060 Hb_000260_100--Hb_007007_060 Hb_000462_060 Hb_000462_060 Hb_002272_130--Hb_000462_060 Hb_033642_030 Hb_033642_030 Hb_002272_130--Hb_033642_030 Hb_000035_110 Hb_000035_110 Hb_002272_130--Hb_000035_110 Hb_000200_380 Hb_000200_380 Hb_002272_130--Hb_000200_380 Hb_002398_030 Hb_002398_030 Hb_002272_130--Hb_002398_030 Hb_002272_130--Hb_032986_010 Hb_002311_310 Hb_002311_310 Hb_027472_120--Hb_002311_310 Hb_027472_120--Hb_004007_220 Hb_001005_030 Hb_001005_030 Hb_027472_120--Hb_001005_030 Hb_001821_160 Hb_001821_160 Hb_027472_120--Hb_001821_160 Hb_150651_030 Hb_150651_030 Hb_027472_120--Hb_150651_030 Hb_000915_080 Hb_000915_080 Hb_027472_120--Hb_000915_080 Hb_011995_010 Hb_011995_010 Hb_000883_020--Hb_011995_010 Hb_000883_020--Hb_000230_560 Hb_000883_020--Hb_032986_010 Hb_001357_350 Hb_001357_350 Hb_000883_020--Hb_001357_350
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.27471 1.17414 2.95305 1.44405 3.0773 3.10271
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.33368 1.9135 1.60041 1.53887 1.83578

CAGE analysis