Hb_004109_320

Information

Type -
Description -
Location Contig4109: 304303-321132
Sequence    

Annotation

kegg
ID rcu:RCOM_1222120
description Vacuolar protein sorting protein, putative
nr
ID XP_012065767.1
description PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
swissprot
ID Q94KD3
description Vacuolar protein sorting-associated protein 52 A OS=Arabidopsis thaliana GN=VPS52 PE=1 SV=1
trembl
ID A0A067L4F4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_25446 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40672: 304331-321134 , PASA_asmbl_40674: 311013-311253
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004109_320 0.0 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
2 Hb_007894_150 0.0495997199 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
3 Hb_000365_230 0.0501517845 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
4 Hb_164390_010 0.0561455802 transcription factor TF Family: bZIP PREDICTED: transcription factor HBP-1a [Jatropha curcas]
5 Hb_002014_010 0.0565133033 - - Uncharacterized protein isoform 1 [Theobroma cacao]
6 Hb_002849_130 0.0585974269 - - PREDICTED: RAB6A-GEF complex partner protein 1-like [Jatropha curcas]
7 Hb_000477_050 0.059228692 - - PREDICTED: 26S protease regulatory subunit 8 homolog A [Jatropha curcas]
8 Hb_007248_030 0.0615112637 - - PREDICTED: uncharacterized protein LOC105633558 [Jatropha curcas]
9 Hb_000803_270 0.0616016496 - - PREDICTED: nuclear cap-binding protein subunit 1 [Jatropha curcas]
10 Hb_006189_020 0.0621086263 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA [Jatropha curcas]
11 Hb_171900_090 0.0637578906 - - conserved hypothetical protein [Ricinus communis]
12 Hb_004586_060 0.0646809607 - - PREDICTED: AP-4 complex subunit mu [Jatropha curcas]
13 Hb_000359_040 0.0649439481 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002400_340 0.0651997955 - - PREDICTED: probable beta-1,3-galactosyltransferase 10 [Jatropha curcas]
15 Hb_000778_010 0.0652151525 - - hypothetical protein [Bacillus subtilis]
16 Hb_000392_420 0.06616857 - - PREDICTED: probable aldehyde dehydrogenase isoform X1 [Jatropha curcas]
17 Hb_012506_030 0.066325904 - - AP-2 complex subunit alpha, putative [Ricinus communis]
18 Hb_004994_240 0.0668746775 - - hypothetical protein PRUPE_ppa004633mg [Prunus persica]
19 Hb_002326_040 0.0670333694 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
20 Hb_000085_170 0.0675402639 - - PREDICTED: transcription initiation factor TFIID subunit 6-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_004109_320 Hb_004109_320 Hb_007894_150 Hb_007894_150 Hb_004109_320--Hb_007894_150 Hb_000365_230 Hb_000365_230 Hb_004109_320--Hb_000365_230 Hb_164390_010 Hb_164390_010 Hb_004109_320--Hb_164390_010 Hb_002014_010 Hb_002014_010 Hb_004109_320--Hb_002014_010 Hb_002849_130 Hb_002849_130 Hb_004109_320--Hb_002849_130 Hb_000477_050 Hb_000477_050 Hb_004109_320--Hb_000477_050 Hb_007894_150--Hb_164390_010 Hb_007894_150--Hb_000365_230 Hb_006189_020 Hb_006189_020 Hb_007894_150--Hb_006189_020 Hb_005000_170 Hb_005000_170 Hb_007894_150--Hb_005000_170 Hb_001226_150 Hb_001226_150 Hb_007894_150--Hb_001226_150 Hb_000365_230--Hb_164390_010 Hb_003098_070 Hb_003098_070 Hb_000365_230--Hb_003098_070 Hb_062226_130 Hb_062226_130 Hb_000365_230--Hb_062226_130 Hb_000778_010 Hb_000778_010 Hb_000365_230--Hb_000778_010 Hb_163175_010 Hb_163175_010 Hb_164390_010--Hb_163175_010 Hb_002400_340 Hb_002400_340 Hb_164390_010--Hb_002400_340 Hb_171900_090 Hb_171900_090 Hb_164390_010--Hb_171900_090 Hb_000019_190 Hb_000019_190 Hb_002014_010--Hb_000019_190 Hb_007248_030 Hb_007248_030 Hb_002014_010--Hb_007248_030 Hb_002014_010--Hb_171900_090 Hb_000702_090 Hb_000702_090 Hb_002014_010--Hb_000702_090 Hb_002014_010--Hb_000365_230 Hb_000313_220 Hb_000313_220 Hb_002849_130--Hb_000313_220 Hb_000976_140 Hb_000976_140 Hb_002849_130--Hb_000976_140 Hb_005730_040 Hb_005730_040 Hb_002849_130--Hb_005730_040 Hb_093458_040 Hb_093458_040 Hb_002849_130--Hb_093458_040 Hb_003428_010 Hb_003428_010 Hb_002849_130--Hb_003428_010 Hb_015807_050 Hb_015807_050 Hb_002849_130--Hb_015807_050 Hb_002989_020 Hb_002989_020 Hb_000477_050--Hb_002989_020 Hb_001009_320 Hb_001009_320 Hb_000477_050--Hb_001009_320 Hb_000120_280 Hb_000120_280 Hb_000477_050--Hb_000120_280 Hb_000460_080 Hb_000460_080 Hb_000477_050--Hb_000460_080 Hb_003528_030 Hb_003528_030 Hb_000477_050--Hb_003528_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.4765 16.777 22.4637 18.8274 13.258 10.5502
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6516 14.5311 12.5631 17.9928 15.3333

CAGE analysis