Hb_004112_080

Information

Type -
Description -
Location Contig4112: 48609-51758
Sequence    

Annotation

kegg
ID pop:POPTR_0016s05570g
description POPTRDRAFT_808447; leucine-rich repeat transmembrane protein kinase
nr
ID XP_012086152.1
description PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
swissprot
ID O22938
description Leucine-rich repeat receptor-like tyrosine-protein kinase PXC3 OS=Arabidopsis thaliana GN=PXC3 PE=2 SV=1
trembl
ID A0A067JT90
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21081 PE=4 SV=1
Gene Ontology
ID GO:0016021
description leucine-rich repeat receptor-like tyrosine-protein kinase at2g41820

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40698: 48886-50248 , PASA_asmbl_40699: 50280-50638 , PASA_asmbl_40701: 51448-51579
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004112_080 0.0 - - PREDICTED: leucine-rich repeat receptor-like tyrosine-protein kinase At2g41820 [Jatropha curcas]
2 Hb_030360_010 0.0782716868 - - -
3 Hb_009367_070 0.0802980586 - - PREDICTED: uncharacterized protein At4g06744-like [Jatropha curcas]
4 Hb_039075_010 0.0880043099 - - hypothetical protein JCGZ_23771 [Jatropha curcas]
5 Hb_004705_060 0.0900936981 - - PREDICTED: serine carboxypeptidase-like 45 [Jatropha curcas]
6 Hb_011628_010 0.0926306673 - - tonoplast intrinsic protein, putative [Ricinus communis]
7 Hb_034713_010 0.1003875928 - - PREDICTED: uncharacterized protein LOC105133378 [Populus euphratica]
8 Hb_000333_140 0.1061309569 - - PREDICTED: subtilisin-like protease SBT1.7 [Jatropha curcas]
9 Hb_002304_110 0.1111567137 - - hypothetical protein MIMGU_mgv1a023246mg [Erythranthe guttata]
10 Hb_002970_030 0.1148355499 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002228_120 0.1196638939 - - potassium channel beta, putative [Ricinus communis]
12 Hb_000813_020 0.1208312732 - - PREDICTED: metacaspase-3-like [Jatropha curcas]
13 Hb_000190_160 0.1214354212 - - PREDICTED: uncharacterized protein LOC105649940 isoform X2 [Jatropha curcas]
14 Hb_001635_140 0.1221801399 - - protein with unknown function [Ricinus communis]
15 Hb_015292_020 0.1245214783 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
16 Hb_002307_150 0.124588445 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA4-like [Jatropha curcas]
17 Hb_000310_040 0.1253786201 - - PREDICTED: adenine phosphoribosyltransferase 3 [Jatropha curcas]
18 Hb_001091_060 0.1264016208 - - hypothetical protein JCGZ_27062 [Jatropha curcas]
19 Hb_004933_010 0.1267070921 - - hypothetical protein POPTR_0018s10810g [Populus trichocarpa]
20 Hb_004732_070 0.128258509 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004112_080 Hb_004112_080 Hb_030360_010 Hb_030360_010 Hb_004112_080--Hb_030360_010 Hb_009367_070 Hb_009367_070 Hb_004112_080--Hb_009367_070 Hb_039075_010 Hb_039075_010 Hb_004112_080--Hb_039075_010 Hb_004705_060 Hb_004705_060 Hb_004112_080--Hb_004705_060 Hb_011628_010 Hb_011628_010 Hb_004112_080--Hb_011628_010 Hb_034713_010 Hb_034713_010 Hb_004112_080--Hb_034713_010 Hb_030360_010--Hb_039075_010 Hb_000739_190 Hb_000739_190 Hb_030360_010--Hb_000739_190 Hb_000310_040 Hb_000310_040 Hb_030360_010--Hb_000310_040 Hb_030360_010--Hb_011628_010 Hb_030360_010--Hb_004705_060 Hb_009367_070--Hb_034713_010 Hb_009367_070--Hb_004705_060 Hb_140627_040 Hb_140627_040 Hb_009367_070--Hb_140627_040 Hb_009367_070--Hb_011628_010 Hb_000207_060 Hb_000207_060 Hb_009367_070--Hb_000207_060 Hb_039075_010--Hb_000310_040 Hb_016911_010 Hb_016911_010 Hb_039075_010--Hb_016911_010 Hb_000333_140 Hb_000333_140 Hb_039075_010--Hb_000333_140 Hb_039075_010--Hb_011628_010 Hb_085829_010 Hb_085829_010 Hb_004705_060--Hb_085829_010 Hb_004705_060--Hb_000333_140 Hb_004705_060--Hb_000207_060 Hb_004705_060--Hb_034713_010 Hb_011628_010--Hb_000333_140 Hb_001136_080 Hb_001136_080 Hb_011628_010--Hb_001136_080 Hb_002307_150 Hb_002307_150 Hb_011628_010--Hb_002307_150 Hb_005211_170 Hb_005211_170 Hb_011628_010--Hb_005211_170 Hb_034713_010--Hb_140627_040 Hb_002304_110 Hb_002304_110 Hb_034713_010--Hb_002304_110 Hb_001898_030 Hb_001898_030 Hb_034713_010--Hb_001898_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.240583 1.36157 4.09963 0 0.00679088
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0164738 0.0129632 0 0.180089 0.220751

CAGE analysis