Hb_004113_030

Information

Type -
Description -
Location Contig4113: 62956-66218
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40703: 63097-64461
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004113_030 0.0 - - -
2 Hb_002294_020 0.0694398822 - - PREDICTED: uncharacterized protein LOC105629874 [Jatropha curcas]
3 Hb_000043_060 0.0855028403 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 35 [Jatropha curcas]
4 Hb_001681_010 0.0938527884 - - PREDICTED: cytochrome P450 81E8-like isoform X1 [Populus euphratica]
5 Hb_004466_080 0.0939897685 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-1-like [Jatropha curcas]
6 Hb_184398_010 0.0942808626 - - PREDICTED: putative ribonuclease H protein At1g65750-like [Citrus sinensis]
7 Hb_025654_010 0.0964786184 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
8 Hb_011540_050 0.0968662179 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_187301_010 0.0969442218 - - PREDICTED: uncharacterized protein LOC105629082 [Jatropha curcas]
10 Hb_000088_280 0.0979231284 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
11 Hb_003370_040 0.0993134201 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]
12 Hb_000758_060 0.0997602091 - - PREDICTED: GDSL esterase/lipase At5g45960 [Jatropha curcas]
13 Hb_001192_020 0.0999019271 - - -
14 Hb_001081_070 0.1022342125 - - hypothetical protein POPTR_0001s08730g [Populus trichocarpa]
15 Hb_009095_020 0.1036038867 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1, partial [Populus euphratica]
16 Hb_020956_050 0.1043425513 - - PREDICTED: uncharacterized protein LOC102670328 [Glycine max]
17 Hb_008021_030 0.1057026377 - - short-chain dehydrogenase, putative [Ricinus communis]
18 Hb_001140_310 0.1061515485 - - hypothetical protein AMTR_s00025p00025050 [Amborella trichopoda]
19 Hb_004528_030 0.1061535571 - - hypothetical protein CICLE_v10033628mg, partial [Citrus clementina]
20 Hb_135174_010 0.1061651805 - - Glycosyl hydrolase family protein 43 isoform 2 [Theobroma cacao]

Gene co-expression network

sample Hb_004113_030 Hb_004113_030 Hb_002294_020 Hb_002294_020 Hb_004113_030--Hb_002294_020 Hb_000043_060 Hb_000043_060 Hb_004113_030--Hb_000043_060 Hb_001681_010 Hb_001681_010 Hb_004113_030--Hb_001681_010 Hb_004466_080 Hb_004466_080 Hb_004113_030--Hb_004466_080 Hb_184398_010 Hb_184398_010 Hb_004113_030--Hb_184398_010 Hb_025654_010 Hb_025654_010 Hb_004113_030--Hb_025654_010 Hb_002294_020--Hb_000043_060 Hb_001081_070 Hb_001081_070 Hb_002294_020--Hb_001081_070 Hb_000758_060 Hb_000758_060 Hb_002294_020--Hb_000758_060 Hb_002294_020--Hb_001681_010 Hb_002294_020--Hb_184398_010 Hb_000043_060--Hb_000758_060 Hb_000015_220 Hb_000015_220 Hb_000043_060--Hb_000015_220 Hb_004197_030 Hb_004197_030 Hb_000043_060--Hb_004197_030 Hb_094074_010 Hb_094074_010 Hb_000043_060--Hb_094074_010 Hb_001681_010--Hb_184398_010 Hb_001681_010--Hb_004466_080 Hb_001681_010--Hb_025654_010 Hb_011540_050 Hb_011540_050 Hb_001681_010--Hb_011540_050 Hb_187301_010 Hb_187301_010 Hb_001681_010--Hb_187301_010 Hb_000088_280 Hb_000088_280 Hb_001681_010--Hb_000088_280 Hb_004466_080--Hb_025654_010 Hb_004466_080--Hb_011540_050 Hb_004466_080--Hb_187301_010 Hb_004466_080--Hb_000088_280 Hb_004466_080--Hb_184398_010 Hb_184398_010--Hb_025654_010 Hb_184398_010--Hb_011540_050 Hb_184398_010--Hb_187301_010 Hb_184398_010--Hb_000088_280 Hb_025654_010--Hb_011540_050 Hb_025654_010--Hb_187301_010 Hb_025654_010--Hb_000088_280 Hb_003370_040 Hb_003370_040 Hb_025654_010--Hb_003370_040 Hb_001192_020 Hb_001192_020 Hb_025654_010--Hb_001192_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0237048 0.376637 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0230878 2.27319

CAGE analysis