Hb_004116_010

Information

Type -
Description -
Location Contig4116: 1985-9492
Sequence    

Annotation

kegg
ID tcc:TCM_009549
description DNA/RNA polymerases superfamily protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID Q7LHG5
description Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY3B-I PE=3 SV=2
trembl
ID A0A061E6T4
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009549 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004116_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_103806_010 0.196790335 - - PREDICTED: aldose 1-epimerase [Jatropha curcas]
3 Hb_010121_020 0.2421415911 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_114874_010 0.2450849303 - - PREDICTED: uncharacterized protein LOC104226968, partial [Nicotiana sylvestris]
5 Hb_115572_040 0.2639812516 - - PREDICTED: uncharacterized protein LOC105632710 [Jatropha curcas]
6 Hb_003376_240 0.2648659363 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003607_100 0.2722540823 - - PREDICTED: zinc finger protein 3 [Jatropha curcas]
8 Hb_005496_100 0.2772819466 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH85-like [Populus euphratica]
9 Hb_008375_020 0.2774014473 - - PREDICTED: uncharacterized protein LOC104894372 [Beta vulgaris subsp. vulgaris]
10 Hb_028910_010 0.2915586676 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_000504_210 0.2993162657 - - hypothetical protein JCGZ_10251 [Jatropha curcas]
12 Hb_076836_010 0.30107211 - - PREDICTED: uncharacterized protein LOC104801925 [Tarenaya hassleriana]
13 Hb_001844_010 0.3012346974 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
14 Hb_002478_050 0.3018677946 - - K(+)/H(+) antiporter, putative [Ricinus communis]
15 Hb_000485_060 0.3022439411 - - PREDICTED: uncharacterized protein LOC105641351 [Jatropha curcas]
16 Hb_005781_010 0.3029413779 - - PREDICTED: probable terpene synthase 6 [Jatropha curcas]
17 Hb_006094_010 0.3032695775 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
18 Hb_177166_010 0.3039144014 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
19 Hb_003828_010 0.3043000725 - - PREDICTED: uncharacterized protein LOC104219776 [Nicotiana sylvestris]
20 Hb_064445_030 0.3043839463 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_004116_010 Hb_004116_010 Hb_103806_010 Hb_103806_010 Hb_004116_010--Hb_103806_010 Hb_010121_020 Hb_010121_020 Hb_004116_010--Hb_010121_020 Hb_114874_010 Hb_114874_010 Hb_004116_010--Hb_114874_010 Hb_115572_040 Hb_115572_040 Hb_004116_010--Hb_115572_040 Hb_003376_240 Hb_003376_240 Hb_004116_010--Hb_003376_240 Hb_003607_100 Hb_003607_100 Hb_004116_010--Hb_003607_100 Hb_103806_010--Hb_003376_240 Hb_011649_040 Hb_011649_040 Hb_103806_010--Hb_011649_040 Hb_145745_020 Hb_145745_020 Hb_103806_010--Hb_145745_020 Hb_010171_010 Hb_010171_010 Hb_103806_010--Hb_010171_010 Hb_002411_020 Hb_002411_020 Hb_103806_010--Hb_002411_020 Hb_001844_010 Hb_001844_010 Hb_010121_020--Hb_001844_010 Hb_076836_010 Hb_076836_010 Hb_010121_020--Hb_076836_010 Hb_002478_050 Hb_002478_050 Hb_010121_020--Hb_002478_050 Hb_000485_060 Hb_000485_060 Hb_010121_020--Hb_000485_060 Hb_005781_010 Hb_005781_010 Hb_010121_020--Hb_005781_010 Hb_006094_010 Hb_006094_010 Hb_010121_020--Hb_006094_010 Hb_150200_010 Hb_150200_010 Hb_114874_010--Hb_150200_010 Hb_004714_020 Hb_004714_020 Hb_114874_010--Hb_004714_020 Hb_002536_020 Hb_002536_020 Hb_114874_010--Hb_002536_020 Hb_007749_030 Hb_007749_030 Hb_114874_010--Hb_007749_030 Hb_114874_010--Hb_115572_040 Hb_115572_040--Hb_002536_020 Hb_115572_040--Hb_003376_240 Hb_000504_210 Hb_000504_210 Hb_115572_040--Hb_000504_210 Hb_028910_010 Hb_028910_010 Hb_115572_040--Hb_028910_010 Hb_115572_040--Hb_007749_030 Hb_008375_020 Hb_008375_020 Hb_115572_040--Hb_008375_020 Hb_009572_010 Hb_009572_010 Hb_003376_240--Hb_009572_010 Hb_000185_020 Hb_000185_020 Hb_003376_240--Hb_000185_020 Hb_003376_240--Hb_000504_210 Hb_007594_020 Hb_007594_020 Hb_003376_240--Hb_007594_020 Hb_086691_010 Hb_086691_010 Hb_003376_240--Hb_086691_010 Hb_003607_100--Hb_008375_020 Hb_003607_100--Hb_028910_010 Hb_003607_100--Hb_076836_010 Hb_003607_100--Hb_001844_010 Hb_003607_100--Hb_002478_050 Hb_003607_100--Hb_000485_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00226809 0 0.00280548
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.00707767 0 0 0 0.0239808

CAGE analysis