Hb_004116_040

Information

Type transcription factor
Description TF Family: HMG
Location Contig4116: 41595-44624
Sequence    

Annotation

kegg
ID pop:POPTR_0010s19720g
description POPTRDRAFT_822396; hypothetical protein
nr
ID XP_002316220.1
description hypothetical protein POPTR_0010s19720g [Populus trichocarpa]
swissprot
ID O49595
description High mobility group B protein 1 OS=Arabidopsis thaliana GN=HMGB1 PE=1 SV=1
trembl
ID B9HSP8
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s19720g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40713: 41894-44870
cDNA
(Sanger)
(ID:Location)		 001_N03.ab1: 42049-44849 , 006_M05.ab1: 42020-44766 , 007_L16.ab1: 42055-44850 , 026_J06.ab1: 41896-43964 , 053_G22.ab1: 42055-44850

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004116_040 0.0 transcription factor TF Family: HMG hypothetical protein POPTR_0010s19720g [Populus trichocarpa]
2 Hb_003086_020 0.0815566006 - - hypothetical protein JCGZ_06091 [Jatropha curcas]
3 Hb_001235_070 0.0972135548 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002025_320 0.0998938867 - - PREDICTED: eukaryotic translation initiation factor 3 subunit I-like [Jatropha curcas]
5 Hb_000608_420 0.0999484715 - - PREDICTED: endoribonuclease Dicer homolog 2 [Jatropha curcas]
6 Hb_148209_120 0.1022848388 - - hypothetical protein CISIN_1g032846mg [Citrus sinensis]
7 Hb_003086_110 0.1036440811 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]
8 Hb_000152_140 0.1069254013 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 7 isoform X1 [Jatropha curcas]
9 Hb_000086_570 0.1124708204 - - hypothetical protein JCGZ_24934 [Jatropha curcas]
10 Hb_005686_110 0.1134812961 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
11 Hb_001369_050 0.1164976572 - - hypothetical protein MIMGU_mgv1a0083172mg, partial [Erythranthe guttata]
12 Hb_000261_460 0.1172402539 - - 60S ribosomal protein L13aA [Hevea brasiliensis]
13 Hb_001718_100 0.1173858858 - - PREDICTED: casein kinase II subunit beta-like isoform X5 [Jatropha curcas]
14 Hb_001754_010 0.1185971975 - - translationally controlled tumor protein [Hevea brasiliensis]
15 Hb_002078_450 0.1192455777 - - nuclear transport factor, putative [Ricinus communis]
16 Hb_023226_090 0.1196889044 - - PREDICTED: glycolipid transfer protein [Jatropha curcas]
17 Hb_000984_190 0.1197865848 - - -
18 Hb_003052_100 0.1201975544 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_000479_180 0.1203589196 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000120_590 0.1217823938 - - PREDICTED: uncharacterized protein LOC105116418 [Populus euphratica]

Gene co-expression network

sample Hb_004116_040 Hb_004116_040 Hb_003086_020 Hb_003086_020 Hb_004116_040--Hb_003086_020 Hb_001235_070 Hb_001235_070 Hb_004116_040--Hb_001235_070 Hb_002025_320 Hb_002025_320 Hb_004116_040--Hb_002025_320 Hb_000608_420 Hb_000608_420 Hb_004116_040--Hb_000608_420 Hb_148209_120 Hb_148209_120 Hb_004116_040--Hb_148209_120 Hb_003086_110 Hb_003086_110 Hb_004116_040--Hb_003086_110 Hb_003086_020--Hb_003086_110 Hb_000152_140 Hb_000152_140 Hb_003086_020--Hb_000152_140 Hb_133271_020 Hb_133271_020 Hb_003086_020--Hb_133271_020 Hb_000272_100 Hb_000272_100 Hb_003086_020--Hb_000272_100 Hb_004662_030 Hb_004662_030 Hb_003086_020--Hb_004662_030 Hb_157854_010 Hb_157854_010 Hb_003086_020--Hb_157854_010 Hb_005686_110 Hb_005686_110 Hb_001235_070--Hb_005686_110 Hb_001369_050 Hb_001369_050 Hb_001235_070--Hb_001369_050 Hb_000371_080 Hb_000371_080 Hb_001235_070--Hb_000371_080 Hb_001235_070--Hb_148209_120 Hb_005398_030 Hb_005398_030 Hb_001235_070--Hb_005398_030 Hb_004595_020 Hb_004595_020 Hb_001235_070--Hb_004595_020 Hb_001473_130 Hb_001473_130 Hb_002025_320--Hb_001473_130 Hb_001427_120 Hb_001427_120 Hb_002025_320--Hb_001427_120 Hb_002025_320--Hb_000152_140 Hb_001718_100 Hb_001718_100 Hb_002025_320--Hb_001718_100 Hb_000983_100 Hb_000983_100 Hb_002025_320--Hb_000983_100 Hb_000956_010 Hb_000956_010 Hb_002025_320--Hb_000956_010 Hb_001881_020 Hb_001881_020 Hb_000608_420--Hb_001881_020 Hb_000865_070 Hb_000865_070 Hb_000608_420--Hb_000865_070 Hb_000091_090 Hb_000091_090 Hb_000608_420--Hb_000091_090 Hb_011828_020 Hb_011828_020 Hb_000608_420--Hb_011828_020 Hb_000086_570 Hb_000086_570 Hb_000608_420--Hb_000086_570 Hb_003020_230 Hb_003020_230 Hb_148209_120--Hb_003020_230 Hb_148209_120--Hb_005398_030 Hb_001691_210 Hb_001691_210 Hb_148209_120--Hb_001691_210 Hb_005997_010 Hb_005997_010 Hb_148209_120--Hb_005997_010 Hb_000120_590 Hb_000120_590 Hb_148209_120--Hb_000120_590 Hb_007166_050 Hb_007166_050 Hb_003086_110--Hb_007166_050 Hb_118977_020 Hb_118977_020 Hb_003086_110--Hb_118977_020 Hb_003086_110--Hb_000272_100 Hb_001437_040 Hb_001437_040 Hb_003086_110--Hb_001437_040 Hb_000617_320 Hb_000617_320 Hb_003086_110--Hb_000617_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
675.731 143.949 14.9088 184.946 500.14 1050.04
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1308.47 828.557 707.747 449.511 73.0376

CAGE analysis