Hb_004116_060

Information

Type -
Description -
Location Contig4116: 92761-99905
Sequence    

Annotation

kegg
ID sly:101254353
description uncharacterized LOC101254353
nr
ID XP_012087570.1
description PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
swissprot
ID Q9FFK6
description Nuclear pore complex protein NUP88 OS=Arabidopsis thaliana GN=NUP88 PE=1 SV=1
trembl
ID A0A067LKE0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01279 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40717: 96152-96399
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004116_060 0.0 - - PREDICTED: nuclear pore complex protein NUP88 [Jatropha curcas]
2 Hb_120410_010 0.0509420259 - - PREDICTED: vesicle-associated membrane protein 727-like [Solanum tuberosum]
3 Hb_005588_030 0.0661703897 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
4 Hb_002530_030 0.0680756844 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
5 Hb_000093_160 0.0694209519 - - PREDICTED: nuclear transcription factor Y subunit B-1-like isoform X1 [Jatropha curcas]
6 Hb_004096_090 0.0694448196 - - Plastid-specific 30S ribosomal protein 3, chloroplast precursor, putative [Ricinus communis]
7 Hb_001142_030 0.0738004154 - - PREDICTED: uncharacterized protein LOC105640023 [Jatropha curcas]
8 Hb_009694_010 0.0750293156 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001534_120 0.0753075473 - - PREDICTED: vacuolar protein-sorting-associated protein 37 homolog 1 [Gossypium raimondii]
10 Hb_022132_050 0.0753179685 - - GTP binding protein, putative [Ricinus communis]
11 Hb_000959_210 0.0762647941 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 27 [Jatropha curcas]
12 Hb_002740_030 0.0766296038 transcription factor TF Family: bHLH conserved hypothetical protein [Ricinus communis]
13 Hb_001012_010 0.0767401971 - - PREDICTED: XIAP-associated factor 1 [Jatropha curcas]
14 Hb_000465_090 0.0771958632 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
15 Hb_003929_250 0.0779928314 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
16 Hb_005697_060 0.0781997061 transcription factor TF Family: HB PREDICTED: pathogenesis-related homeodomain protein isoform X1 [Jatropha curcas]
17 Hb_000317_240 0.0783992707 - - PREDICTED: protein DYAD [Jatropha curcas]
18 Hb_008453_140 0.0788409465 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
19 Hb_005731_050 0.0793911702 - - hypothetical protein JCGZ_26820 [Jatropha curcas]
20 Hb_014720_120 0.0799220879 - - Phosphoenolpyruvate/phosphate translocator 1, chloroplastic -like protein [Gossypium arboreum]

Gene co-expression network

sample Hb_004116_060 Hb_004116_060 Hb_120410_010 Hb_120410_010 Hb_004116_060--Hb_120410_010 Hb_005588_030 Hb_005588_030 Hb_004116_060--Hb_005588_030 Hb_002530_030 Hb_002530_030 Hb_004116_060--Hb_002530_030 Hb_000093_160 Hb_000093_160 Hb_004116_060--Hb_000093_160 Hb_004096_090 Hb_004096_090 Hb_004116_060--Hb_004096_090 Hb_001142_030 Hb_001142_030 Hb_004116_060--Hb_001142_030 Hb_008453_140 Hb_008453_140 Hb_120410_010--Hb_008453_140 Hb_120410_010--Hb_001142_030 Hb_120410_010--Hb_002530_030 Hb_002740_030 Hb_002740_030 Hb_120410_010--Hb_002740_030 Hb_010381_090 Hb_010381_090 Hb_120410_010--Hb_010381_090 Hb_001012_010 Hb_001012_010 Hb_005588_030--Hb_001012_010 Hb_004093_090 Hb_004093_090 Hb_005588_030--Hb_004093_090 Hb_000107_030 Hb_000107_030 Hb_005588_030--Hb_000107_030 Hb_073973_130 Hb_073973_130 Hb_005588_030--Hb_073973_130 Hb_005588_030--Hb_120410_010 Hb_000317_240 Hb_000317_240 Hb_002530_030--Hb_000317_240 Hb_001305_010 Hb_001305_010 Hb_002530_030--Hb_001305_010 Hb_000016_250 Hb_000016_250 Hb_002530_030--Hb_000016_250 Hb_004310_150 Hb_004310_150 Hb_002530_030--Hb_004310_150 Hb_011995_010 Hb_011995_010 Hb_002530_030--Hb_011995_010 Hb_003010_030 Hb_003010_030 Hb_000093_160--Hb_003010_030 Hb_003428_030 Hb_003428_030 Hb_000093_160--Hb_003428_030 Hb_096563_010 Hb_096563_010 Hb_000093_160--Hb_096563_010 Hb_000093_160--Hb_004310_150 Hb_000120_790 Hb_000120_790 Hb_000093_160--Hb_000120_790 Hb_001258_090 Hb_001258_090 Hb_000093_160--Hb_001258_090 Hb_001195_480 Hb_001195_480 Hb_004096_090--Hb_001195_480 Hb_009694_010 Hb_009694_010 Hb_004096_090--Hb_009694_010 Hb_005054_060 Hb_005054_060 Hb_004096_090--Hb_005054_060 Hb_000633_020 Hb_000633_020 Hb_004096_090--Hb_000633_020 Hb_010222_020 Hb_010222_020 Hb_004096_090--Hb_010222_020 Hb_001142_030--Hb_002740_030 Hb_003125_120 Hb_003125_120 Hb_001142_030--Hb_003125_120 Hb_001142_030--Hb_008453_140 Hb_001163_050 Hb_001163_050 Hb_001142_030--Hb_001163_050 Hb_000580_180 Hb_000580_180 Hb_001142_030--Hb_000580_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.6697 1.12537 1.99617 1.35415 1.89925 2.26312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.75016 2.94759 1.3395 1.14052 0.994739

CAGE analysis