Hb_004116_080

Information

Type -
Description -
Location Contig4116: 110647-119357
Sequence    

Annotation

kegg
ID rcu:RCOM_0339590
description ATATH9, putative
nr
ID XP_002533645.1
description ATATH9, putative [Ricinus communis]
swissprot
ID O04212
description Putative ABC1 protein At2g40090 OS=Arabidopsis thaliana GN=At2g40090 PE=2 SV=2
trembl
ID B9T5X6
description ATATH9, putative OS=Ricinus communis GN=RCOM_0339590 PE=4 SV=1
Gene Ontology
ID GO:0004672
description abc1 protein at2g40090

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40721: 110654-119313
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004116_080 0.0 - - ATATH9, putative [Ricinus communis]
2 Hb_000045_190 0.0924996715 - - PREDICTED: eukaryotic translation initiation factor 3 subunit F [Jatropha curcas]
3 Hb_000046_260 0.0928807856 - - acyl carrier protein, putative [Ricinus communis]
4 Hb_003018_120 0.0957325236 - - PREDICTED: probable small nuclear ribonucleoprotein F [Jatropha curcas]
5 Hb_000798_030 0.1065268255 - - PREDICTED: uncharacterized protein LOC105635919 [Jatropha curcas]
6 Hb_000160_130 0.110688958 - - PREDICTED: uncharacterized protein LOC105648215 [Jatropha curcas]
7 Hb_000188_130 0.1135598645 - - PREDICTED: uncharacterized protein LOC102628744 [Citrus sinensis]
8 Hb_001045_080 0.1138251669 - - PREDICTED: uncharacterized protein LOC105646704 [Jatropha curcas]
9 Hb_003125_150 0.1168965044 - - PREDICTED: protein transport protein Sec61 subunit gamma [Jatropha curcas]
10 Hb_004724_140 0.1183790284 transcription factor TF Family: NF-YB PREDICTED: receptor protein kinase CLAVATA1 [Jatropha curcas]
11 Hb_007741_050 0.1188639814 - - vesicle-associated membrane protein, putative [Ricinus communis]
12 Hb_002447_030 0.1192721794 - - PREDICTED: cytochrome b5 domain-containing protein RLF [Jatropha curcas]
13 Hb_002518_050 0.1201825323 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
14 Hb_000120_750 0.1207485573 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
15 Hb_001080_080 0.1225753543 - - small nuclear ribonucleoprotein, putative [Ricinus communis]
16 Hb_002529_100 0.1237115534 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
17 Hb_000521_150 0.1238787045 - - PREDICTED: uncharacterized protein LOC105650332 [Jatropha curcas]
18 Hb_004204_120 0.1239520697 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
19 Hb_000948_210 0.1244242767 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
20 Hb_001341_130 0.1251965768 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004116_080 Hb_004116_080 Hb_000045_190 Hb_000045_190 Hb_004116_080--Hb_000045_190 Hb_000046_260 Hb_000046_260 Hb_004116_080--Hb_000046_260 Hb_003018_120 Hb_003018_120 Hb_004116_080--Hb_003018_120 Hb_000798_030 Hb_000798_030 Hb_004116_080--Hb_000798_030 Hb_000160_130 Hb_000160_130 Hb_004116_080--Hb_000160_130 Hb_000188_130 Hb_000188_130 Hb_004116_080--Hb_000188_130 Hb_000634_050 Hb_000634_050 Hb_000045_190--Hb_000634_050 Hb_000045_190--Hb_000798_030 Hb_000120_750 Hb_000120_750 Hb_000045_190--Hb_000120_750 Hb_001153_080 Hb_001153_080 Hb_000045_190--Hb_001153_080 Hb_001045_080 Hb_001045_080 Hb_000045_190--Hb_001045_080 Hb_002529_100 Hb_002529_100 Hb_000045_190--Hb_002529_100 Hb_000046_260--Hb_001045_080 Hb_000312_090 Hb_000312_090 Hb_000046_260--Hb_000312_090 Hb_000046_260--Hb_000045_190 Hb_001687_040 Hb_001687_040 Hb_000046_260--Hb_001687_040 Hb_002214_050 Hb_002214_050 Hb_000046_260--Hb_002214_050 Hb_002518_050 Hb_002518_050 Hb_003018_120--Hb_002518_050 Hb_011381_060 Hb_011381_060 Hb_003018_120--Hb_011381_060 Hb_003018_120--Hb_000798_030 Hb_001377_150 Hb_001377_150 Hb_003018_120--Hb_001377_150 Hb_000023_230 Hb_000023_230 Hb_003018_120--Hb_000023_230 Hb_004204_120 Hb_004204_120 Hb_003018_120--Hb_004204_120 Hb_000417_110 Hb_000417_110 Hb_000798_030--Hb_000417_110 Hb_070986_010 Hb_070986_010 Hb_000798_030--Hb_070986_010 Hb_000798_030--Hb_000634_050 Hb_007741_050 Hb_007741_050 Hb_000798_030--Hb_007741_050 Hb_000798_030--Hb_004204_120 Hb_007778_030 Hb_007778_030 Hb_000160_130--Hb_007778_030 Hb_010407_040 Hb_010407_040 Hb_000160_130--Hb_010407_040 Hb_000160_130--Hb_003018_120 Hb_145880_030 Hb_145880_030 Hb_000160_130--Hb_145880_030 Hb_023226_040 Hb_023226_040 Hb_000160_130--Hb_023226_040 Hb_000163_160 Hb_000163_160 Hb_000160_130--Hb_000163_160 Hb_001341_130 Hb_001341_130 Hb_000188_130--Hb_001341_130 Hb_000188_130--Hb_000045_190 Hb_002759_230 Hb_002759_230 Hb_000188_130--Hb_002759_230 Hb_000188_130--Hb_001153_080 Hb_000188_130--Hb_001045_080 Hb_000188_130--Hb_002529_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
30.2749 3.37591 10.1958 9.07507 10.146 17.4581
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
41.7351 40.772 17.1658 4.17501 4.11766

CAGE analysis