Hb_004116_110

Information

Type -
Description -
Location Contig4116: 131672-132006
Sequence    

Annotation

kegg
ID mtr:MTR_3g064100
description hypothetical protein
nr
ID XP_003600599.1
description hypothetical protein MTR_3g064100 [Medicago truncatula]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004116_110 0.0 - - hypothetical protein MTR_3g064100 [Medicago truncatula]
2 Hb_004691_040 0.1463586954 - - PREDICTED: uncharacterized protein LOC105775124 [Gossypium raimondii]
3 Hb_015675_060 0.1491865848 - - -
4 Hb_048197_010 0.1784143298 - - -
5 Hb_174107_010 0.1945713482 - - PREDICTED: uncharacterized protein LOC105775323 [Gossypium raimondii]
6 Hb_188382_010 0.2083816276 - - Ran GTPase binding protein, putative [Ricinus communis]
7 Hb_002742_010 0.2164668975 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
8 Hb_035905_010 0.2382422016 - - PREDICTED: uncharacterized protein LOC105627956 [Jatropha curcas]
9 Hb_001821_120 0.2394783 - - PREDICTED: uncharacterized protein LOC105643956 [Jatropha curcas]
10 Hb_000563_530 0.2450024151 - - PREDICTED: uncharacterized protein LOC105643453 [Jatropha curcas]
11 Hb_000373_300 0.246772069 - - hypothetical protein F775_20382 [Aegilops tauschii]
12 Hb_029982_010 0.2497249939 - - hypothetical protein CICLE_v10006145mg [Citrus clementina]
13 Hb_056768_010 0.2512295258 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Cicer arietinum]
14 Hb_010588_010 0.2533040744 - - -
15 Hb_170305_020 0.2552474554 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
16 Hb_004055_060 0.2552495343 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
17 Hb_022500_010 0.2572372408 - - -
18 Hb_036369_010 0.2575653771 - - -
19 Hb_001141_400 0.2576287481 - - hypothetical protein B456_007G2854002, partial [Gossypium raimondii]
20 Hb_030765_010 0.2585981074 desease resistance Gene Name: ABC_tran PREDICTED: ABC transporter G family member 11-like isoform X1 [Solanum lycopersicum]

Gene co-expression network

sample Hb_004116_110 Hb_004116_110 Hb_004691_040 Hb_004691_040 Hb_004116_110--Hb_004691_040 Hb_015675_060 Hb_015675_060 Hb_004116_110--Hb_015675_060 Hb_048197_010 Hb_048197_010 Hb_004116_110--Hb_048197_010 Hb_174107_010 Hb_174107_010 Hb_004116_110--Hb_174107_010 Hb_188382_010 Hb_188382_010 Hb_004116_110--Hb_188382_010 Hb_002742_010 Hb_002742_010 Hb_004116_110--Hb_002742_010 Hb_035905_010 Hb_035905_010 Hb_004691_040--Hb_035905_010 Hb_004691_040--Hb_015675_060 Hb_004691_040--Hb_002742_010 Hb_000373_300 Hb_000373_300 Hb_004691_040--Hb_000373_300 Hb_004055_060 Hb_004055_060 Hb_004691_040--Hb_004055_060 Hb_015675_060--Hb_188382_010 Hb_142522_010 Hb_142522_010 Hb_015675_060--Hb_142522_010 Hb_029982_010 Hb_029982_010 Hb_015675_060--Hb_029982_010 Hb_015675_060--Hb_002742_010 Hb_036369_010 Hb_036369_010 Hb_048197_010--Hb_036369_010 Hb_170305_020 Hb_170305_020 Hb_048197_010--Hb_170305_020 Hb_001248_020 Hb_001248_020 Hb_048197_010--Hb_001248_020 Hb_002821_010 Hb_002821_010 Hb_048197_010--Hb_002821_010 Hb_077562_040 Hb_077562_040 Hb_048197_010--Hb_077562_040 Hb_023675_010 Hb_023675_010 Hb_048197_010--Hb_023675_010 Hb_002153_010 Hb_002153_010 Hb_174107_010--Hb_002153_010 Hb_162999_010 Hb_162999_010 Hb_174107_010--Hb_162999_010 Hb_001488_110 Hb_001488_110 Hb_174107_010--Hb_001488_110 Hb_036285_010 Hb_036285_010 Hb_174107_010--Hb_036285_010 Hb_001095_060 Hb_001095_060 Hb_174107_010--Hb_001095_060 Hb_039548_010 Hb_039548_010 Hb_188382_010--Hb_039548_010 Hb_030765_010 Hb_030765_010 Hb_188382_010--Hb_030765_010 Hb_188382_010--Hb_002742_010 Hb_188382_010--Hb_029982_010 Hb_000562_080 Hb_000562_080 Hb_188382_010--Hb_000562_080 Hb_001141_400 Hb_001141_400 Hb_002742_010--Hb_001141_400 Hb_000329_530 Hb_000329_530 Hb_002742_010--Hb_000329_530 Hb_002742_010--Hb_000373_300 Hb_028365_010 Hb_028365_010 Hb_002742_010--Hb_028365_010 Hb_003023_050 Hb_003023_050 Hb_002742_010--Hb_003023_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.4336 0 0 0 1.23694 3.60495
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.85536 6.29624 0 0.712333 0

CAGE analysis