Hb_004116_120

Information

Type -
Description -
Location Contig4116: 136167-136514
Sequence    

Annotation

kegg
ID pop:POPTR_0008s06820g
description POPTRDRAFT_765569; hypothetical protein
nr
ID XP_012087513.1
description PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]
swissprot
ID O04211
description Protein EARLY FLOWERING 4 OS=Arabidopsis thaliana GN=ELF4 PE=1 SV=1
trembl
ID A0A067LKD8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01274 PE=4 SV=1
Gene Ontology
ID GO:0042803
description protein early flowering 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40722: 136066-136683
cDNA
(Sanger)
(ID:Location)		 021_F20.ab1: 136070-136682

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004116_120 0.0 - - PREDICTED: protein EARLY FLOWERING 4 [Jatropha curcas]
2 Hb_002045_190 0.1338200411 - - PREDICTED: histone H2A variant 1 [Jatropha curcas]
3 Hb_033594_040 0.142293471 - - PREDICTED: heptahelical transmembrane protein 4-like isoform X2 [Jatropha curcas]
4 Hb_000563_440 0.1505268436 - - PREDICTED: condensin-2 complex subunit H2 isoform X2 [Jatropha curcas]
5 Hb_002307_020 0.1587923622 - - PREDICTED: histone H1-like [Jatropha curcas]
6 Hb_006275_060 0.167055283 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
7 Hb_003399_100 0.1745920362 - - PREDICTED: putative cyclin-A3-1 [Jatropha curcas]
8 Hb_002235_380 0.1800352943 - - hypothetical protein JCGZ_19860 [Jatropha curcas]
9 Hb_001780_080 0.1808773702 - - PREDICTED: tubulin beta-2 chain [Jatropha curcas]
10 Hb_089140_090 0.1843001554 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like isoform X3 [Beta vulgaris subsp. vulgaris]
11 Hb_002007_040 0.1848539907 - - unnamed protein product [Coffea canephora]
12 Hb_000139_280 0.1933102228 - - PREDICTED: mitogen-activated protein kinase kinase kinase NPK1 isoform X1 [Jatropha curcas]
13 Hb_003633_100 0.1952014727 - - hypoia-responsive family protein 1 [Hevea brasiliensis]
14 Hb_008173_060 0.1990796873 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
15 Hb_030627_070 0.1994477479 - - histone H4 [Zea mays]
16 Hb_002540_070 0.1998297037 - - PREDICTED: protein cornichon homolog 1 [Jatropha curcas]
17 Hb_004449_140 0.2005742169 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
18 Hb_005375_050 0.2006160765 - - inorganic pyrophosphatase, putative [Ricinus communis]
19 Hb_000349_230 0.2035526435 - - PREDICTED: protein TPX2 [Jatropha curcas]
20 Hb_004449_040 0.2043354555 - - PREDICTED: uncharacterized protein C630.12 [Jatropha curcas]

Gene co-expression network

sample Hb_004116_120 Hb_004116_120 Hb_002045_190 Hb_002045_190 Hb_004116_120--Hb_002045_190 Hb_033594_040 Hb_033594_040 Hb_004116_120--Hb_033594_040 Hb_000563_440 Hb_000563_440 Hb_004116_120--Hb_000563_440 Hb_002307_020 Hb_002307_020 Hb_004116_120--Hb_002307_020 Hb_006275_060 Hb_006275_060 Hb_004116_120--Hb_006275_060 Hb_003399_100 Hb_003399_100 Hb_004116_120--Hb_003399_100 Hb_002045_190--Hb_003399_100 Hb_002045_190--Hb_006275_060 Hb_030627_070 Hb_030627_070 Hb_002045_190--Hb_030627_070 Hb_089140_090 Hb_089140_090 Hb_002045_190--Hb_089140_090 Hb_002045_190--Hb_033594_040 Hb_004046_060 Hb_004046_060 Hb_033594_040--Hb_004046_060 Hb_033594_040--Hb_089140_090 Hb_033594_040--Hb_000563_440 Hb_000139_280 Hb_000139_280 Hb_033594_040--Hb_000139_280 Hb_002540_070 Hb_002540_070 Hb_000563_440--Hb_002540_070 Hb_000684_120 Hb_000684_120 Hb_000563_440--Hb_000684_120 Hb_002235_380 Hb_002235_380 Hb_000563_440--Hb_002235_380 Hb_004155_020 Hb_004155_020 Hb_000563_440--Hb_004155_020 Hb_005271_140 Hb_005271_140 Hb_000563_440--Hb_005271_140 Hb_001863_160 Hb_001863_160 Hb_000563_440--Hb_001863_160 Hb_002307_020--Hb_006275_060 Hb_002007_040 Hb_002007_040 Hb_002307_020--Hb_002007_040 Hb_000051_080 Hb_000051_080 Hb_002307_020--Hb_000051_080 Hb_003784_040 Hb_003784_040 Hb_002307_020--Hb_003784_040 Hb_000155_150 Hb_000155_150 Hb_002307_020--Hb_000155_150 Hb_001780_080 Hb_001780_080 Hb_002307_020--Hb_001780_080 Hb_006275_060--Hb_000155_150 Hb_006275_060--Hb_003784_040 Hb_006275_060--Hb_003399_100 Hb_005725_150 Hb_005725_150 Hb_006275_060--Hb_005725_150 Hb_003399_100--Hb_030627_070 Hb_003399_100--Hb_005725_150 Hb_010998_050 Hb_010998_050 Hb_003399_100--Hb_010998_050 Hb_089889_010 Hb_089889_010 Hb_003399_100--Hb_089889_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.85012 3.20586 24.7835 6.91452 0.314932 0.513256
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.6467 6.24046 1.2673 2.12588 0.692752

CAGE analysis