Hb_004116_160

Information

Type -
Description -
Location Contig4116: 165883-169165
Sequence    

Annotation

kegg
ID rcu:RCOM_0179130
description hypothetical protein
nr
ID XP_012087373.1
description PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LJF2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01260 PE=4 SV=1
Gene Ontology
ID GO:0007623
description nli interacting factor family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40725: 165901-169179
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004116_160 0.0 - - PREDICTED: carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1 isoform X2 [Jatropha curcas]
2 Hb_054865_020 0.0843971085 transcription factor TF Family: HB homeobox leucine zipper family protein [Populus trichocarpa]
3 Hb_001396_020 0.0992659693 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
4 Hb_000098_240 0.1051254718 - - PREDICTED: UDP-glucose:glycoprotein glucosyltransferase [Jatropha curcas]
5 Hb_001279_020 0.1083895682 - - PREDICTED: uncharacterized protein LOC105633240 [Jatropha curcas]
6 Hb_000529_130 0.1097211105 - - hypothetical protein POPTR_0007s14320g [Populus trichocarpa]
7 Hb_001624_040 0.1130714893 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 5 isoform X1 [Jatropha curcas]
8 Hb_000878_160 0.1140555492 - - PREDICTED: D-lactate dehydrogenase [cytochrome], mitochondrial [Jatropha curcas]
9 Hb_065525_130 0.1155908356 - - PREDICTED: probable methionine--tRNA ligase, mitochondrial [Jatropha curcas]
10 Hb_007594_080 0.115963943 - - PREDICTED: polygalacturonate 4-alpha-galacturonosyltransferase [Jatropha curcas]
11 Hb_031042_060 0.1164792409 - - PREDICTED: asparagine--tRNA ligase, chloroplastic/mitochondrial [Jatropha curcas]
12 Hb_002870_020 0.1168065751 - - PREDICTED: uncharacterized GPI-anchored protein At1g61900 isoform X1 [Jatropha curcas]
13 Hb_005873_020 0.1206653443 - - PREDICTED: ATP-dependent zinc metalloprotease FtsH [Jatropha curcas]
14 Hb_001623_490 0.1215277453 - - PREDICTED: haloacid dehalogenase-like hydrolase domain-containing protein At2g33255 isoform X2 [Jatropha curcas]
15 Hb_003925_060 0.1220374231 - - PREDICTED: uncharacterized protein LOC105645218 isoform X1 [Jatropha curcas]
16 Hb_000562_070 0.1225212539 - - PREDICTED: uncharacterized protein LOC105635371 isoform X1 [Jatropha curcas]
17 Hb_003462_060 0.1228228798 - - PREDICTED: ABC transporter G family member 24-like [Jatropha curcas]
18 Hb_002249_020 0.1232211662 - - PREDICTED: dual specificity protein phosphatase PHS1 [Jatropha curcas]
19 Hb_002026_090 0.1235197572 - - PREDICTED: ubiquitin-conjugating enzyme E2 4-like [Jatropha curcas]
20 Hb_006120_040 0.1239481847 - - PREDICTED: prostatic spermine-binding protein [Jatropha curcas]

Gene co-expression network

sample Hb_004116_160 Hb_004116_160 Hb_054865_020 Hb_054865_020 Hb_004116_160--Hb_054865_020 Hb_001396_020 Hb_001396_020 Hb_004116_160--Hb_001396_020 Hb_000098_240 Hb_000098_240 Hb_004116_160--Hb_000098_240 Hb_001279_020 Hb_001279_020 Hb_004116_160--Hb_001279_020 Hb_000529_130 Hb_000529_130 Hb_004116_160--Hb_000529_130 Hb_001624_040 Hb_001624_040 Hb_004116_160--Hb_001624_040 Hb_005873_020 Hb_005873_020 Hb_054865_020--Hb_005873_020 Hb_000631_090 Hb_000631_090 Hb_054865_020--Hb_000631_090 Hb_052128_010 Hb_052128_010 Hb_054865_020--Hb_052128_010 Hb_004718_060 Hb_004718_060 Hb_054865_020--Hb_004718_060 Hb_054865_020--Hb_000098_240 Hb_001396_020--Hb_001279_020 Hb_000300_560 Hb_000300_560 Hb_001396_020--Hb_000300_560 Hb_000482_050 Hb_000482_050 Hb_001396_020--Hb_000482_050 Hb_002600_070 Hb_002600_070 Hb_001396_020--Hb_002600_070 Hb_001396_020--Hb_000529_130 Hb_012779_080 Hb_012779_080 Hb_001396_020--Hb_012779_080 Hb_033642_040 Hb_033642_040 Hb_000098_240--Hb_033642_040 Hb_016448_010 Hb_016448_010 Hb_000098_240--Hb_016448_010 Hb_000878_160 Hb_000878_160 Hb_000098_240--Hb_000878_160 Hb_001158_160 Hb_001158_160 Hb_000098_240--Hb_001158_160 Hb_026234_010 Hb_026234_010 Hb_000098_240--Hb_026234_010 Hb_000820_150 Hb_000820_150 Hb_000098_240--Hb_000820_150 Hb_000562_070 Hb_000562_070 Hb_001279_020--Hb_000562_070 Hb_029552_020 Hb_029552_020 Hb_001279_020--Hb_029552_020 Hb_001053_080 Hb_001053_080 Hb_001279_020--Hb_001053_080 Hb_001279_090 Hb_001279_090 Hb_001279_020--Hb_001279_090 Hb_001279_020--Hb_000529_130 Hb_004994_350 Hb_004994_350 Hb_000529_130--Hb_004994_350 Hb_000529_130--Hb_000562_070 Hb_000529_130--Hb_029552_020 Hb_003849_160 Hb_003849_160 Hb_000529_130--Hb_003849_160 Hb_011609_010 Hb_011609_010 Hb_001624_040--Hb_011609_010 Hb_002301_210 Hb_002301_210 Hb_001624_040--Hb_002301_210 Hb_000453_230 Hb_000453_230 Hb_001624_040--Hb_000453_230 Hb_000418_090 Hb_000418_090 Hb_001624_040--Hb_000418_090 Hb_000803_090 Hb_000803_090 Hb_001624_040--Hb_000803_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.5952 20.2298 49.1041 23.7598 15.254 19.4566
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.05867 5.61508 5.35675 10.6506 33.8836

CAGE analysis