Hb_004116_170

Information

Type -
Description -
Location Contig4116: 171568-176862
Sequence    

Annotation

kegg
ID pop:POPTR_0008s06890g
description POPTRDRAFT_820414; kinase family protein
nr
ID XP_012087345.1
description PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
swissprot
ID Q9P6P3
description Serine/threonine-protein kinase ppk15 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ppk15 PE=1 SV=1
trembl
ID A0A067LKC6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01259 PE=4 SV=1
Gene Ontology
ID GO:0005737
description kinase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40726: 171572-176874
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004116_170 0.0 - - PREDICTED: probable serine/threonine-protein kinase dyrk1 isoform X1 [Jatropha curcas]
2 Hb_000237_040 0.1130144574 - - PREDICTED: V-type proton ATPase subunit a3-like [Jatropha curcas]
3 Hb_055062_040 0.1151623174 - - ceramidase, putative [Ricinus communis]
4 Hb_183867_010 0.1266954959 - - PREDICTED: pentatricopeptide repeat-containing protein At1g62930, chloroplastic-like [Populus euphratica]
5 Hb_021297_020 0.1277340022 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
6 Hb_002928_090 0.1314046316 - - PREDICTED: metallocarboxypeptidase A-like protein TRV_02598 [Jatropha curcas]
7 Hb_126976_010 0.1332759846 - - -
8 Hb_003340_010 0.1356407295 - - PREDICTED: ubiquitin-activating enzyme E1 1 [Vitis vinifera]
9 Hb_001488_220 0.1360233799 - - PREDICTED: exocyst complex component EXO70B1 [Jatropha curcas]
10 Hb_004046_030 0.1360466215 - - PREDICTED: GPCR-type G protein 1 [Jatropha curcas]
11 Hb_003994_220 0.1366965838 - - PREDICTED: V-type proton ATPase catalytic subunit A [Jatropha curcas]
12 Hb_027337_100 0.1371574145 - - Putative phagocytic receptor 1b [Gossypium arboreum]
13 Hb_005892_020 0.1373011453 - - PREDICTED: uncharacterized protein LOC105632170 isoform X1 [Jatropha curcas]
14 Hb_010042_030 0.1375144917 - - PREDICTED: UDP-N-acetylglucosamine diphosphorylase 1 [Jatropha curcas]
15 Hb_000787_160 0.1377586998 - - PREDICTED: GDP-mannose transporter GONST1 isoform X1 [Jatropha curcas]
16 Hb_000022_160 0.1378420801 - - -
17 Hb_012678_020 0.1386830232 - - PREDICTED: outer envelope protein 61 isoform X1 [Jatropha curcas]
18 Hb_012340_070 0.1398226589 - - Gamma-secretase subunit APH1-like family protein [Populus trichocarpa]
19 Hb_138475_010 0.1401551914 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Populus euphratica]
20 Hb_004040_030 0.1414986344 - - PREDICTED: probable inactive purple acid phosphatase 28 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004116_170 Hb_004116_170 Hb_000237_040 Hb_000237_040 Hb_004116_170--Hb_000237_040 Hb_055062_040 Hb_055062_040 Hb_004116_170--Hb_055062_040 Hb_183867_010 Hb_183867_010 Hb_004116_170--Hb_183867_010 Hb_021297_020 Hb_021297_020 Hb_004116_170--Hb_021297_020 Hb_002928_090 Hb_002928_090 Hb_004116_170--Hb_002928_090 Hb_126976_010 Hb_126976_010 Hb_004116_170--Hb_126976_010 Hb_000976_100 Hb_000976_100 Hb_000237_040--Hb_000976_100 Hb_027445_020 Hb_027445_020 Hb_000237_040--Hb_027445_020 Hb_000237_040--Hb_126976_010 Hb_001369_360 Hb_001369_360 Hb_000237_040--Hb_001369_360 Hb_000237_050 Hb_000237_050 Hb_000237_040--Hb_000237_050 Hb_000237_040--Hb_055062_040 Hb_002025_330 Hb_002025_330 Hb_055062_040--Hb_002025_330 Hb_003280_020 Hb_003280_020 Hb_055062_040--Hb_003280_020 Hb_084670_010 Hb_084670_010 Hb_055062_040--Hb_084670_010 Hb_004048_120 Hb_004048_120 Hb_055062_040--Hb_004048_120 Hb_012733_070 Hb_012733_070 Hb_055062_040--Hb_012733_070 Hb_002749_060 Hb_002749_060 Hb_055062_040--Hb_002749_060 Hb_004094_020 Hb_004094_020 Hb_183867_010--Hb_004094_020 Hb_013358_050 Hb_013358_050 Hb_183867_010--Hb_013358_050 Hb_132101_010 Hb_132101_010 Hb_183867_010--Hb_132101_010 Hb_003994_220 Hb_003994_220 Hb_183867_010--Hb_003994_220 Hb_031527_080 Hb_031527_080 Hb_183867_010--Hb_031527_080 Hb_022092_010 Hb_022092_010 Hb_183867_010--Hb_022092_010 Hb_000649_060 Hb_000649_060 Hb_021297_020--Hb_000649_060 Hb_021297_020--Hb_027445_020 Hb_000674_010 Hb_000674_010 Hb_021297_020--Hb_000674_010 Hb_000701_030 Hb_000701_030 Hb_021297_020--Hb_000701_030 Hb_003058_200 Hb_003058_200 Hb_021297_020--Hb_003058_200 Hb_001226_130 Hb_001226_130 Hb_021297_020--Hb_001226_130 Hb_000014_040 Hb_000014_040 Hb_002928_090--Hb_000014_040 Hb_001242_120 Hb_001242_120 Hb_002928_090--Hb_001242_120 Hb_001051_050 Hb_001051_050 Hb_002928_090--Hb_001051_050 Hb_005725_130 Hb_005725_130 Hb_002928_090--Hb_005725_130 Hb_000390_050 Hb_000390_050 Hb_002928_090--Hb_000390_050 Hb_009569_040 Hb_009569_040 Hb_002928_090--Hb_009569_040 Hb_002874_110 Hb_002874_110 Hb_126976_010--Hb_002874_110 Hb_000890_070 Hb_000890_070 Hb_126976_010--Hb_000890_070 Hb_000809_230 Hb_000809_230 Hb_126976_010--Hb_000809_230 Hb_126976_010--Hb_000976_100 Hb_004679_030 Hb_004679_030 Hb_126976_010--Hb_004679_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.83106 2.2272 3.08786 7.89864 1.20272 5.221
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.10294 0.998135 2.23066 6.18826 6.37233

CAGE analysis