Hb_004116_190

Information

Type transcription factor
Description TF Family: Alfin-like
Location Contig4116: 200759-205348
Sequence    

Annotation

kegg
ID cmo:103501445
description PHD finger protein ALFIN-LIKE 2-like
nr
ID XP_012087319.1
description PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
swissprot
ID Q9FFF5
description PHD finger protein ALFIN-LIKE 1 OS=Arabidopsis thaliana GN=AL1 PE=1 SV=1
trembl
ID A0A067L8P8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01257 PE=4 SV=1
Gene Ontology
ID GO:0008270
description phd finger protein alfin-like 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40733: 200791-205256 , PASA_asmbl_40734: 201976-202236
cDNA
(Sanger)
(ID:Location)		 019_P02.ab1: 200794-204671 , 033_J21.ab1: 200794-204642 , 043_E09.ab1: 200794-204702

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004116_190 0.0 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
2 Hb_001633_050 0.0440527666 - - PREDICTED: histone H2A.Z-specific chaperone CHZ1 [Jatropha curcas]
3 Hb_002995_020 0.0478557222 transcription factor TF Family: Alfin-like PREDICTED: PHD finger protein ALFIN-LIKE 2 [Jatropha curcas]
4 Hb_000656_240 0.0495855724 - - proteasome subunit alpha type, putative [Ricinus communis]
5 Hb_000020_060 0.0511482437 - - PREDICTED: trafficking protein particle complex subunit 4 [Jatropha curcas]
6 Hb_000676_180 0.0521914786 - - Ubiquitin-conjugating enzyme 16 [Theobroma cacao]
7 Hb_005846_040 0.0603872204 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 4 [Populus euphratica]
8 Hb_001504_110 0.0624868048 - - PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]
9 Hb_000580_090 0.0629348196 - - PREDICTED: tRNA 2'-phosphotransferase 1 isoform X1 [Jatropha curcas]
10 Hb_001821_010 0.0645414011 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
11 Hb_172426_040 0.0651491179 - - PREDICTED: ELL-associated factor 1 [Jatropha curcas]
12 Hb_003787_010 0.06538209 - - PREDICTED: 40S ribosomal protein S3-3-like [Phoenix dactylifera]
13 Hb_000815_320 0.0655842739 - - PREDICTED: vesicle transport v-SNARE 12-like isoform X2 [Jatropha curcas]
14 Hb_000217_030 0.0664702392 - - Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1 [Theobroma cacao]
15 Hb_000059_370 0.0671273869 - - PREDICTED: U6 snRNA phosphodiesterase [Jatropha curcas]
16 Hb_000205_090 0.0683563557 - - hypothetical protein POPTR_0019s03570g [Populus trichocarpa]
17 Hb_002534_150 0.0685727634 - - catalytic, putative [Ricinus communis]
18 Hb_004109_170 0.0693171809 - - PREDICTED: probable ribokinase [Jatropha curcas]
19 Hb_012286_030 0.0696046686 transcription factor TF Family: MED7 PREDICTED: mediator of RNA polymerase II transcription subunit 7a [Solanum lycopersicum]
20 Hb_015279_010 0.0698160636 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]

Gene co-expression network

sample Hb_004116_190 Hb_004116_190 Hb_001633_050 Hb_001633_050 Hb_004116_190--Hb_001633_050 Hb_002995_020 Hb_002995_020 Hb_004116_190--Hb_002995_020 Hb_000656_240 Hb_000656_240 Hb_004116_190--Hb_000656_240 Hb_000020_060 Hb_000020_060 Hb_004116_190--Hb_000020_060 Hb_000676_180 Hb_000676_180 Hb_004116_190--Hb_000676_180 Hb_005846_040 Hb_005846_040 Hb_004116_190--Hb_005846_040 Hb_000777_040 Hb_000777_040 Hb_001633_050--Hb_000777_040 Hb_001633_050--Hb_002995_020 Hb_000504_140 Hb_000504_140 Hb_001633_050--Hb_000504_140 Hb_001633_050--Hb_000656_240 Hb_001512_030 Hb_001512_030 Hb_001633_050--Hb_001512_030 Hb_002995_020--Hb_000020_060 Hb_003787_010 Hb_003787_010 Hb_002995_020--Hb_003787_010 Hb_002995_020--Hb_000656_240 Hb_001123_130 Hb_001123_130 Hb_002995_020--Hb_001123_130 Hb_001504_110 Hb_001504_110 Hb_000656_240--Hb_001504_110 Hb_001195_480 Hb_001195_480 Hb_000656_240--Hb_001195_480 Hb_011512_070 Hb_011512_070 Hb_000656_240--Hb_011512_070 Hb_000580_090 Hb_000580_090 Hb_000656_240--Hb_000580_090 Hb_008554_060 Hb_008554_060 Hb_000656_240--Hb_008554_060 Hb_159809_020 Hb_159809_020 Hb_000020_060--Hb_159809_020 Hb_172426_040 Hb_172426_040 Hb_000020_060--Hb_172426_040 Hb_000020_060--Hb_003787_010 Hb_002110_120 Hb_002110_120 Hb_000020_060--Hb_002110_120 Hb_000479_090 Hb_000479_090 Hb_000676_180--Hb_000479_090 Hb_005725_250 Hb_005725_250 Hb_000676_180--Hb_005725_250 Hb_012286_030 Hb_012286_030 Hb_000676_180--Hb_012286_030 Hb_000676_180--Hb_005846_040 Hb_004635_100 Hb_004635_100 Hb_000676_180--Hb_004635_100 Hb_003151_040 Hb_003151_040 Hb_005846_040--Hb_003151_040 Hb_000373_070 Hb_000373_070 Hb_005846_040--Hb_000373_070 Hb_000030_030 Hb_000030_030 Hb_005846_040--Hb_000030_030 Hb_001245_100 Hb_001245_100 Hb_005846_040--Hb_001245_100 Hb_005846_040--Hb_003787_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.8485 25.0196 33.7928 27.6717 35.5877 35.4511
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
56.393 76.0306 49.1529 31.7516 22.0895

CAGE analysis