Hb_004116_200

Information

Type -
Description -
Location Contig4116: 218942-221776
Sequence    

Annotation

kegg
ID pop:POPTR_0008s06930g
description POPTRDRAFT_765579; oxidoreductase family protein
nr
ID XP_012087306.1
description PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
swissprot
ID P51091
description Leucoanthocyanidin dioxygenase OS=Malus domestica GN=ANS PE=2 SV=1
trembl
ID A0A067L8J5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01256 PE=3 SV=1
Gene Ontology
ID GO:0005506
description oxidoreductase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40735: 220973-221684
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004116_200 0.0 - - PREDICTED: flavonol synthase/flavanone 3-hydroxylase [Jatropha curcas]
2 Hb_002045_130 0.1342799148 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
3 Hb_003750_080 0.1403760065 - - PREDICTED: DNA repair protein complementing XP-C cells homolog [Jatropha curcas]
4 Hb_163145_020 0.1447207928 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
5 Hb_000635_220 0.1458625769 - - PREDICTED: F-box protein At1g67340 [Jatropha curcas]
6 Hb_001500_040 0.1497333727 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-1, mitochondrial isoform X2 [Jatropha curcas]
7 Hb_001856_020 0.1517908766 transcription factor TF Family: Orphans ethylene receptor, putative [Ricinus communis]
8 Hb_005147_090 0.1523222305 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X1 [Jatropha curcas]
9 Hb_000291_110 0.1526230569 - - eukaryotic translation initiation factor [Hevea brasiliensis]
10 Hb_018790_060 0.1546644433 - - hypothetical protein JCGZ_21628 [Jatropha curcas]
11 Hb_000049_310 0.1546658672 - - Myosin-J heavy chain, partial [Glycine soja]
12 Hb_000189_640 0.1551557044 - - PREDICTED: probable RNA helicase SDE3 [Jatropha curcas]
13 Hb_176681_010 0.1576134267 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
14 Hb_002835_410 0.1577571524 - - clathrin coat assembly protein ap-1, putative [Ricinus communis]
15 Hb_001123_230 0.1583131169 - - PREDICTED: uncharacterized protein LOC105647321 [Jatropha curcas]
16 Hb_003151_050 0.1584507481 desease resistance Gene Name: MMR_HSR1 PREDICTED: uncharacterized protein LOC105639402 isoform X1 [Jatropha curcas]
17 Hb_000200_340 0.1585207075 - - PREDICTED: pentatricopeptide repeat-containing protein At5g66520-like [Jatropha curcas]
18 Hb_004108_050 0.1600095249 - - PREDICTED: elongation factor Tu, mitochondrial [Jatropha curcas]
19 Hb_022216_020 0.1609625231 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
20 Hb_000179_050 0.1622546754 - - 40S ribosomal protein S17A [Hevea brasiliensis]

Gene co-expression network

sample Hb_004116_200 Hb_004116_200 Hb_002045_130 Hb_002045_130 Hb_004116_200--Hb_002045_130 Hb_003750_080 Hb_003750_080 Hb_004116_200--Hb_003750_080 Hb_163145_020 Hb_163145_020 Hb_004116_200--Hb_163145_020 Hb_000635_220 Hb_000635_220 Hb_004116_200--Hb_000635_220 Hb_001500_040 Hb_001500_040 Hb_004116_200--Hb_001500_040 Hb_001856_020 Hb_001856_020 Hb_004116_200--Hb_001856_020 Hb_000189_640 Hb_000189_640 Hb_002045_130--Hb_000189_640 Hb_000365_020 Hb_000365_020 Hb_002045_130--Hb_000365_020 Hb_003893_010 Hb_003893_010 Hb_002045_130--Hb_003893_010 Hb_002045_130--Hb_001500_040 Hb_002489_010 Hb_002489_010 Hb_002045_130--Hb_002489_010 Hb_010710_010 Hb_010710_010 Hb_003750_080--Hb_010710_010 Hb_000291_110 Hb_000291_110 Hb_003750_080--Hb_000291_110 Hb_000413_180 Hb_000413_180 Hb_003750_080--Hb_000413_180 Hb_000230_080 Hb_000230_080 Hb_003750_080--Hb_000230_080 Hb_001584_160 Hb_001584_160 Hb_003750_080--Hb_001584_160 Hb_000062_240 Hb_000062_240 Hb_003750_080--Hb_000062_240 Hb_001329_300 Hb_001329_300 Hb_163145_020--Hb_001329_300 Hb_000567_260 Hb_000567_260 Hb_163145_020--Hb_000567_260 Hb_163145_020--Hb_000635_220 Hb_002006_090 Hb_002006_090 Hb_163145_020--Hb_002006_090 Hb_000457_150 Hb_000457_150 Hb_163145_020--Hb_000457_150 Hb_000614_230 Hb_000614_230 Hb_163145_020--Hb_000614_230 Hb_003687_100 Hb_003687_100 Hb_000635_220--Hb_003687_100 Hb_000343_130 Hb_000343_130 Hb_000635_220--Hb_000343_130 Hb_007747_200 Hb_007747_200 Hb_000635_220--Hb_007747_200 Hb_000317_280 Hb_000317_280 Hb_000635_220--Hb_000317_280 Hb_006846_110 Hb_006846_110 Hb_000635_220--Hb_006846_110 Hb_006400_060 Hb_006400_060 Hb_001500_040--Hb_006400_060 Hb_001269_550 Hb_001269_550 Hb_001500_040--Hb_001269_550 Hb_001959_210 Hb_001959_210 Hb_001500_040--Hb_001959_210 Hb_002016_110 Hb_002016_110 Hb_001500_040--Hb_002016_110 Hb_000483_200 Hb_000483_200 Hb_001500_040--Hb_000483_200 Hb_006915_050 Hb_006915_050 Hb_001500_040--Hb_006915_050 Hb_000179_050 Hb_000179_050 Hb_001856_020--Hb_000179_050 Hb_000193_250 Hb_000193_250 Hb_001856_020--Hb_000193_250 Hb_000056_100 Hb_000056_100 Hb_001856_020--Hb_000056_100 Hb_000124_020 Hb_000124_020 Hb_001856_020--Hb_000124_020 Hb_000157_010 Hb_000157_010 Hb_001856_020--Hb_000157_010 Hb_001123_230 Hb_001123_230 Hb_001856_020--Hb_001123_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.77951 3.04971 0.840119 0.971182 7.69073 3.45394
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.03963 4.40629 10.793 5.73755 0.553694

CAGE analysis