Hb_004117_010

Information

Type -
Description -
Location Contig4117: 1865-7371
Sequence    

Annotation

kegg
ID rcu:RCOM_1731780
description 60S ribosomal protein L10, mitochondrial, putative
nr
ID XP_002522195.1
description 60S ribosomal protein L10, mitochondrial, putative [Ricinus communis]
swissprot
ID Q9Y7M5
description 54S ribosomal protein L10, mitochondrial OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=mrpl10 PE=3 SV=2
trembl
ID B9S876
description 60S ribosomal protein L10, mitochondrial, putative OS=Ricinus communis GN=RCOM_1731780 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 54s ribosomal protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40736: 1662-7573
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_010 0.0 - - 60S ribosomal protein L10, mitochondrial, putative [Ricinus communis]
2 Hb_000109_090 0.0816885683 - - PREDICTED: deoxyhypusine hydroxylase [Jatropha curcas]
3 Hb_003185_080 0.0938062905 rubber biosynthesis Gene Name: 1-deoxy-D-xylulose-5-phosphate synthase 1-deoxyxylulose-5-phosphate synthase, putative [Ricinus communis]
4 Hb_026549_040 0.0971964432 - - PREDICTED: protein SLOW GREEN 1, chloroplastic [Jatropha curcas]
5 Hb_008648_010 0.0981395133 - - PREDICTED: pre-rRNA-processing protein ESF2 [Jatropha curcas]
6 Hb_003599_040 0.0988735937 - - unnamed protein product [Vitis vinifera]
7 Hb_000331_080 0.0989851956 - - PREDICTED: UPF0235 protein At5g63440 isoform X1 [Gossypium raimondii]
8 Hb_002686_020 0.0993169729 - - galactose-1-phosphate uridylyltransferase, putative [Ricinus communis]
9 Hb_010080_090 0.0996811515 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 2 [Jatropha curcas]
10 Hb_002685_190 0.1001029271 transcription factor TF Family: SET PREDICTED: probable zinc metalloprotease EGY1, chloroplastic [Jatropha curcas]
11 Hb_002928_130 0.1002224804 - - PREDICTED: small nuclear ribonucleoprotein Sm D3 [Jatropha curcas]
12 Hb_000025_620 0.1010809492 - - hypothetical protein POPTR_0009s05200g [Populus trichocarpa]
13 Hb_001292_020 0.1010903328 - - PREDICTED: keratin, type II cytoskeletal 5 isoform X1 [Sesamum indicum]
14 Hb_004934_110 0.1019934311 transcription factor TF Family: HMG hypothetical protein B456_002G115100 [Gossypium raimondii]
15 Hb_012725_050 0.102602173 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
16 Hb_003126_080 0.1026979879 - - PREDICTED: uncharacterized protein LOC105647117 [Jatropha curcas]
17 Hb_004204_120 0.1028300939 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
18 Hb_010921_010 0.1031785691 - - Small nuclear ribonucleoprotein family protein [Theobroma cacao]
19 Hb_007317_150 0.1044256443 - - PREDICTED: 40S ribosomal protein S25 [Jatropha curcas]
20 Hb_001504_110 0.1050814496 - - PREDICTED: uncharacterized protein LOC105630336 [Jatropha curcas]

Gene co-expression network

sample Hb_004117_010 Hb_004117_010 Hb_000109_090 Hb_000109_090 Hb_004117_010--Hb_000109_090 Hb_003185_080 Hb_003185_080 Hb_004117_010--Hb_003185_080 Hb_026549_040 Hb_026549_040 Hb_004117_010--Hb_026549_040 Hb_008648_010 Hb_008648_010 Hb_004117_010--Hb_008648_010 Hb_003599_040 Hb_003599_040 Hb_004117_010--Hb_003599_040 Hb_000331_080 Hb_000331_080 Hb_004117_010--Hb_000331_080 Hb_000853_170 Hb_000853_170 Hb_000109_090--Hb_000853_170 Hb_010921_010 Hb_010921_010 Hb_000109_090--Hb_010921_010 Hb_003398_130 Hb_003398_130 Hb_000109_090--Hb_003398_130 Hb_003126_080 Hb_003126_080 Hb_000109_090--Hb_003126_080 Hb_002043_190 Hb_002043_190 Hb_000109_090--Hb_002043_190 Hb_005993_040 Hb_005993_040 Hb_000109_090--Hb_005993_040 Hb_006198_110 Hb_006198_110 Hb_003185_080--Hb_006198_110 Hb_000656_400 Hb_000656_400 Hb_003185_080--Hb_000656_400 Hb_003749_010 Hb_003749_010 Hb_003185_080--Hb_003749_010 Hb_001235_190 Hb_001235_190 Hb_003185_080--Hb_001235_190 Hb_028995_040 Hb_028995_040 Hb_003185_080--Hb_028995_040 Hb_002942_190 Hb_002942_190 Hb_026549_040--Hb_002942_190 Hb_001292_020 Hb_001292_020 Hb_026549_040--Hb_001292_020 Hb_000479_090 Hb_000479_090 Hb_026549_040--Hb_000479_090 Hb_002686_020 Hb_002686_020 Hb_026549_040--Hb_002686_020 Hb_000384_100 Hb_000384_100 Hb_026549_040--Hb_000384_100 Hb_012675_050 Hb_012675_050 Hb_026549_040--Hb_012675_050 Hb_002477_070 Hb_002477_070 Hb_008648_010--Hb_002477_070 Hb_000059_370 Hb_000059_370 Hb_008648_010--Hb_000059_370 Hb_012725_050 Hb_012725_050 Hb_008648_010--Hb_012725_050 Hb_005194_010 Hb_005194_010 Hb_008648_010--Hb_005194_010 Hb_001105_030 Hb_001105_030 Hb_008648_010--Hb_001105_030 Hb_032258_030 Hb_032258_030 Hb_008648_010--Hb_032258_030 Hb_002284_240 Hb_002284_240 Hb_003599_040--Hb_002284_240 Hb_159809_020 Hb_159809_020 Hb_003599_040--Hb_159809_020 Hb_000926_300 Hb_000926_300 Hb_003599_040--Hb_000926_300 Hb_002685_190 Hb_002685_190 Hb_003599_040--Hb_002685_190 Hb_000327_190 Hb_000327_190 Hb_003599_040--Hb_000327_190 Hb_000007_100 Hb_000007_100 Hb_003599_040--Hb_000007_100 Hb_153112_020 Hb_153112_020 Hb_000331_080--Hb_153112_020 Hb_004994_100 Hb_004994_100 Hb_000331_080--Hb_004994_100 Hb_008878_030 Hb_008878_030 Hb_000331_080--Hb_008878_030 Hb_000840_030 Hb_000840_030 Hb_000331_080--Hb_000840_030 Hb_000331_080--Hb_002686_020 Hb_000331_080--Hb_012725_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.9566 9.0049 11.2732 5.48851 18.5483 13.3247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
35.8145 35.4184 14.6218 15.6963 11.7501

CAGE analysis