Hb_004117_030

Information

Type -
Description -
Location Contig4117: 15290-17429
Sequence    

Annotation

kegg
ID egr:104449809
description hypothetical protein
nr
ID XP_010062381.1
description PREDICTED: uncharacterized protein LOC104449809 [Eucalyptus grandis]
swissprot
ID -
description -
trembl
ID A0A059BV67
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_F02960 PE=4 SV=1
Gene Ontology
ID GO:0009507
description zinc finger and btb domain-containing protein 11 isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40738: 16037-16903 , PASA_asmbl_40739: 15351-17331 , PASA_asmbl_40740: 15583-17312
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_030 0.0 - - PREDICTED: uncharacterized protein LOC104449809 [Eucalyptus grandis]
2 Hb_000890_040 0.1393639119 - - PREDICTED: pentatricopeptide repeat-containing protein At4g15720 [Jatropha curcas]
3 Hb_063100_010 0.1413980493 - - TATA box-binding protein-associated factor [Populus trichocarpa]
4 Hb_000740_070 0.1466181883 - - -
5 Hb_007164_020 0.1554987973 - - hypothetical protein glysoja_025872 [Glycine soja]
6 Hb_007765_060 0.1574802003 - - Proliferating cell nuclear antigen [Theobroma cacao]
7 Hb_001486_080 0.1596336603 - - PREDICTED: eukaryotic translation initiation factor NCBP [Jatropha curcas]
8 Hb_134951_010 0.1601700347 - - PREDICTED: transcription factor MYB1R1 [Jatropha curcas]
9 Hb_000453_190 0.1610958352 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
10 Hb_185467_010 0.1620039345 - - -
11 Hb_007416_200 0.1621881132 - - PREDICTED: putative peptidyl-tRNA hydrolase PTRHD1 [Jatropha curcas]
12 Hb_027380_160 0.1622890044 - - -
13 Hb_000707_060 0.1623084347 - - -
14 Hb_000046_300 0.1631245838 transcription factor TF Family: TUB phosphoric diester hydrolase, putative [Ricinus communis]
15 Hb_001926_040 0.1640714804 - - PREDICTED: uncharacterized protein LOC105649618 [Jatropha curcas]
16 Hb_000125_120 0.1643878417 transcription factor TF Family: mTERF -
17 Hb_002276_050 0.1647790692 - - PREDICTED: DNA-directed RNA polymerase 1B, mitochondrial [Jatropha curcas]
18 Hb_000140_330 0.1654156606 - - PREDICTED: uncharacterized protein LOC105642909 [Jatropha curcas]
19 Hb_000879_130 0.1706534572 - - -
20 Hb_000684_300 0.1719535229 transcription factor TF Family: NF-YB hypothetical protein CICLE_v10012920mg [Citrus clementina]

Gene co-expression network

sample Hb_004117_030 Hb_004117_030 Hb_000890_040 Hb_000890_040 Hb_004117_030--Hb_000890_040 Hb_063100_010 Hb_063100_010 Hb_004117_030--Hb_063100_010 Hb_000740_070 Hb_000740_070 Hb_004117_030--Hb_000740_070 Hb_007164_020 Hb_007164_020 Hb_004117_030--Hb_007164_020 Hb_007765_060 Hb_007765_060 Hb_004117_030--Hb_007765_060 Hb_001486_080 Hb_001486_080 Hb_004117_030--Hb_001486_080 Hb_134951_010 Hb_134951_010 Hb_000890_040--Hb_134951_010 Hb_000046_300 Hb_000046_300 Hb_000890_040--Hb_000046_300 Hb_000890_040--Hb_007164_020 Hb_000721_010 Hb_000721_010 Hb_000890_040--Hb_000721_010 Hb_000175_450 Hb_000175_450 Hb_000890_040--Hb_000175_450 Hb_000465_470 Hb_000465_470 Hb_000890_040--Hb_000465_470 Hb_045046_010 Hb_045046_010 Hb_063100_010--Hb_045046_010 Hb_003878_140 Hb_003878_140 Hb_063100_010--Hb_003878_140 Hb_000224_060 Hb_000224_060 Hb_063100_010--Hb_000224_060 Hb_001584_170 Hb_001584_170 Hb_063100_010--Hb_001584_170 Hb_002977_010 Hb_002977_010 Hb_063100_010--Hb_002977_010 Hb_000465_310 Hb_000465_310 Hb_063100_010--Hb_000465_310 Hb_001474_030 Hb_001474_030 Hb_000740_070--Hb_001474_030 Hb_003656_160 Hb_003656_160 Hb_000740_070--Hb_003656_160 Hb_005701_040 Hb_005701_040 Hb_000740_070--Hb_005701_040 Hb_001504_150 Hb_001504_150 Hb_000740_070--Hb_001504_150 Hb_004678_020 Hb_004678_020 Hb_000740_070--Hb_004678_020 Hb_000740_070--Hb_007164_020 Hb_189147_010 Hb_189147_010 Hb_007164_020--Hb_189147_010 Hb_007164_020--Hb_001504_150 Hb_001898_230 Hb_001898_230 Hb_007164_020--Hb_001898_230 Hb_106552_050 Hb_106552_050 Hb_007164_020--Hb_106552_050 Hb_000085_240 Hb_000085_240 Hb_007164_020--Hb_000085_240 Hb_000359_330 Hb_000359_330 Hb_007164_020--Hb_000359_330 Hb_007765_060--Hb_000740_070 Hb_005725_070 Hb_005725_070 Hb_007765_060--Hb_005725_070 Hb_000487_100 Hb_000487_100 Hb_007765_060--Hb_000487_100 Hb_001956_050 Hb_001956_050 Hb_007765_060--Hb_001956_050 Hb_000544_040 Hb_000544_040 Hb_007765_060--Hb_000544_040 Hb_000406_240 Hb_000406_240 Hb_001486_080--Hb_000406_240 Hb_002301_220 Hb_002301_220 Hb_001486_080--Hb_002301_220 Hb_007982_070 Hb_007982_070 Hb_001486_080--Hb_007982_070 Hb_008554_120 Hb_008554_120 Hb_001486_080--Hb_008554_120 Hb_005883_010 Hb_005883_010 Hb_001486_080--Hb_005883_010 Hb_001486_080--Hb_134951_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
19.1464 7.99769 7.57118 0.162956 11.3745 9.78906
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.75097 6.39929 7.12268 1.53354 2.0033

CAGE analysis