Hb_004117_110

Information

Type -
Description -
Location Contig4117: 78318-81964
Sequence    

Annotation

kegg
ID pop:POPTR_0016s14420g
description POPTRDRAFT_254409; hypothetical protein
nr
ID XP_002323079.2
description hypothetical protein POPTR_0016s14420g [Populus trichocarpa]
swissprot
ID Q9ZVH7
description Protein FATTY ACID EXPORT 3, chloroplastic OS=Arabidopsis thaliana GN=FAX3 PE=2 SV=2
trembl
ID B9IGT7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s14420g PE=4 SV=2
Gene Ontology
ID GO:0009941
description transmembrane proteins

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40750: 78501-78961 , PASA_asmbl_40751: 78501-78961 , PASA_asmbl_40752: 80353-81082
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_110 0.0 - - hypothetical protein POPTR_0016s14420g [Populus trichocarpa]
2 Hb_000028_370 0.0713701334 - - Guanine nucleotide-binding protein alpha-2 subunit [Glycine soja]
3 Hb_013738_020 0.0766802534 - - PREDICTED: E3 ubiquitin-protein ligase RING1 [Jatropha curcas]
4 Hb_000215_320 0.0789018528 - - phosphofructokinase [Hevea brasiliensis]
5 Hb_002026_210 0.0797864479 - - PREDICTED: probable serine/threonine-protein kinase At5g41260 [Jatropha curcas]
6 Hb_168978_010 0.0819778105 - - PREDICTED: uncharacterized protein LOC105630751 [Jatropha curcas]
7 Hb_002110_080 0.0822907181 - - FH interacting protein 1 [Theobroma cacao]
8 Hb_002205_110 0.0842953696 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000120_170 0.086480433 - - selenoprotein [Populus trichocarpa]
10 Hb_000441_140 0.0872052037 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-7-like isoform X2 [Jatropha curcas]
11 Hb_004990_010 0.0873895558 - - PREDICTED: BTB/POZ and MATH domain-containing protein 4 [Jatropha curcas]
12 Hb_001205_240 0.0889289758 - - PREDICTED: uncharacterized protein LOC105645528 [Jatropha curcas]
13 Hb_002739_020 0.0910395618 - - PREDICTED: UTP--glucose-1-phosphate uridylyltransferase [Jatropha curcas]
14 Hb_003906_200 0.0914663239 - - PREDICTED: zinc finger CCCH domain-containing protein 48 [Jatropha curcas]
15 Hb_028285_010 0.0923673638 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
16 Hb_001221_110 0.0936358835 transcription factor TF Family: SWI/SNF-BAF60b hypothetical protein JCGZ_11303 [Jatropha curcas]
17 Hb_001860_030 0.094517065 - - PREDICTED: cleavage stimulation factor subunit 77 isoform X5 [Jatropha curcas]
18 Hb_028512_020 0.0951933959 - - PREDICTED: protein S-acyltransferase 11 isoform X2 [Jatropha curcas]
19 Hb_002728_080 0.0959298759 - - WD-repeat protein, putative [Ricinus communis]
20 Hb_023313_030 0.0966147183 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_004117_110 Hb_004117_110 Hb_000028_370 Hb_000028_370 Hb_004117_110--Hb_000028_370 Hb_013738_020 Hb_013738_020 Hb_004117_110--Hb_013738_020 Hb_000215_320 Hb_000215_320 Hb_004117_110--Hb_000215_320 Hb_002026_210 Hb_002026_210 Hb_004117_110--Hb_002026_210 Hb_168978_010 Hb_168978_010 Hb_004117_110--Hb_168978_010 Hb_002110_080 Hb_002110_080 Hb_004117_110--Hb_002110_080 Hb_002205_110 Hb_002205_110 Hb_000028_370--Hb_002205_110 Hb_001205_240 Hb_001205_240 Hb_000028_370--Hb_001205_240 Hb_008725_230 Hb_008725_230 Hb_000028_370--Hb_008725_230 Hb_002232_410 Hb_002232_410 Hb_000028_370--Hb_002232_410 Hb_003761_010 Hb_003761_010 Hb_000028_370--Hb_003761_010 Hb_000028_370--Hb_168978_010 Hb_000116_450 Hb_000116_450 Hb_013738_020--Hb_000116_450 Hb_000220_010 Hb_000220_010 Hb_013738_020--Hb_000220_010 Hb_000705_170 Hb_000705_170 Hb_013738_020--Hb_000705_170 Hb_002936_010 Hb_002936_010 Hb_013738_020--Hb_002936_010 Hb_004990_010 Hb_004990_010 Hb_013738_020--Hb_004990_010 Hb_013738_020--Hb_002110_080 Hb_000890_150 Hb_000890_150 Hb_000215_320--Hb_000890_150 Hb_033594_080 Hb_033594_080 Hb_000215_320--Hb_033594_080 Hb_000538_230 Hb_000538_230 Hb_000215_320--Hb_000538_230 Hb_000749_050 Hb_000749_050 Hb_000215_320--Hb_000749_050 Hb_017387_010 Hb_017387_010 Hb_000215_320--Hb_017387_010 Hb_028512_020 Hb_028512_020 Hb_002026_210--Hb_028512_020 Hb_011849_040 Hb_011849_040 Hb_002026_210--Hb_011849_040 Hb_000009_500 Hb_000009_500 Hb_002026_210--Hb_000009_500 Hb_000614_210 Hb_000614_210 Hb_002026_210--Hb_000614_210 Hb_000923_010 Hb_000923_010 Hb_002026_210--Hb_000923_010 Hb_000340_530 Hb_000340_530 Hb_002026_210--Hb_000340_530 Hb_001511_060 Hb_001511_060 Hb_168978_010--Hb_001511_060 Hb_000359_060 Hb_000359_060 Hb_168978_010--Hb_000359_060 Hb_000260_350 Hb_000260_350 Hb_168978_010--Hb_000260_350 Hb_093458_040 Hb_093458_040 Hb_168978_010--Hb_093458_040 Hb_149985_010 Hb_149985_010 Hb_168978_010--Hb_149985_010 Hb_000030_030 Hb_000030_030 Hb_168978_010--Hb_000030_030 Hb_000029_060 Hb_000029_060 Hb_002110_080--Hb_000029_060 Hb_001481_060 Hb_001481_060 Hb_002110_080--Hb_001481_060 Hb_002492_010 Hb_002492_010 Hb_002110_080--Hb_002492_010 Hb_001716_020 Hb_001716_020 Hb_002110_080--Hb_001716_020 Hb_000087_060 Hb_000087_060 Hb_002110_080--Hb_000087_060 Hb_000962_030 Hb_000962_030 Hb_002110_080--Hb_000962_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.6199 13.708 8.02102 17.8517 8.72965 10.3726
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.9192 10.7016 7.81547 10.7145 7.27764

CAGE analysis