Hb_004117_120

Information

Type -
Description -
Location Contig4117: 87393-91332
Sequence    

Annotation

kegg
ID rcu:RCOM_1057860
description Brassinosteroid LRR receptor kinase precursor, putative (EC:2.7.10.1 1.3.1.74)
nr
ID XP_002528692.1
description Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
swissprot
ID Q9LZV7
description Leucine-rich repeat receptor-like protein kinase PXC2 OS=Arabidopsis thaliana GN=PXC2 PE=2 SV=1
trembl
ID B9SRS9
description Brassinosteroid LRR receptor kinase, putative OS=Ricinus communis GN=RCOM_1057860 PE=4 SV=1
Gene Ontology
ID GO:0005886
description probably inactive leucine-rich repeat receptor-like protein kinase at3g28040

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40754: 86746-91557 , PASA_asmbl_40755: 88766-91557
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_120 0.0 - - Brassinosteroid LRR receptor kinase precursor, putative [Ricinus communis]
2 Hb_183610_010 0.094728476 - - PREDICTED: uncharacterized protein LOC105635777 [Jatropha curcas]
3 Hb_005183_170 0.1325123535 - - PREDICTED: pentatricopeptide repeat-containing protein At2g04860 [Jatropha curcas]
4 Hb_024074_020 0.1518037572 - - PREDICTED: probable serine/threonine-protein kinase At1g09600 [Jatropha curcas]
5 Hb_000984_310 0.158206998 - - Hydrolase, hydrolyzing O-glycosyl compounds, putative [Theobroma cacao]
6 Hb_000291_160 0.165237976 - - PREDICTED: uncharacterized protein LOC105638863 [Jatropha curcas]
7 Hb_162547_010 0.1660997894 - - -
8 Hb_002660_110 0.1674059641 - - PREDICTED: serine/threonine-protein kinase-like protein CCR1 isoform X1 [Jatropha curcas]
9 Hb_002046_150 0.1706799075 - - PREDICTED: probable receptor-like protein kinase At5g15080 [Jatropha curcas]
10 Hb_011671_080 0.1739928238 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
11 Hb_000679_230 0.174574908 - - PREDICTED: serine/threonine-protein kinase PRP4 homolog [Jatropha curcas]
12 Hb_001217_040 0.1748754764 - - hypothetical protein MIMGU_mgv1a0002421mg, partial [Erythranthe guttata]
13 Hb_000482_020 0.177057206 - - cell wall invertase [Manihot esculenta]
14 Hb_001486_190 0.1781911453 - - hypothetical protein JCGZ_02702 [Jatropha curcas]
15 Hb_002325_070 0.1802486023 - - ATP binding protein, putative [Ricinus communis]
16 Hb_000343_140 0.1816896784 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
17 Hb_007153_050 0.1839903209 - - PREDICTED: transmembrane 9 superfamily member 8 [Jatropha curcas]
18 Hb_001018_110 0.186167962 - - unnamed protein product [Coffea canephora]
19 Hb_012651_010 0.1864087304 - - PREDICTED: uncharacterized protein LOC105645131 [Jatropha curcas]
20 Hb_000429_050 0.187926729 - - PREDICTED: serine/threonine-protein kinase Nek6 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004117_120 Hb_004117_120 Hb_183610_010 Hb_183610_010 Hb_004117_120--Hb_183610_010 Hb_005183_170 Hb_005183_170 Hb_004117_120--Hb_005183_170 Hb_024074_020 Hb_024074_020 Hb_004117_120--Hb_024074_020 Hb_000984_310 Hb_000984_310 Hb_004117_120--Hb_000984_310 Hb_000291_160 Hb_000291_160 Hb_004117_120--Hb_000291_160 Hb_162547_010 Hb_162547_010 Hb_004117_120--Hb_162547_010 Hb_183610_010--Hb_005183_170 Hb_183610_010--Hb_000984_310 Hb_001217_040 Hb_001217_040 Hb_183610_010--Hb_001217_040 Hb_183610_010--Hb_000291_160 Hb_000482_020 Hb_000482_020 Hb_183610_010--Hb_000482_020 Hb_005183_170--Hb_000984_310 Hb_003617_020 Hb_003617_020 Hb_005183_170--Hb_003617_020 Hb_001486_190 Hb_001486_190 Hb_005183_170--Hb_001486_190 Hb_011671_080 Hb_011671_080 Hb_005183_170--Hb_011671_080 Hb_002046_150 Hb_002046_150 Hb_024074_020--Hb_002046_150 Hb_000002_480 Hb_000002_480 Hb_024074_020--Hb_000002_480 Hb_002660_110 Hb_002660_110 Hb_024074_020--Hb_002660_110 Hb_001008_200 Hb_001008_200 Hb_024074_020--Hb_001008_200 Hb_012651_010 Hb_012651_010 Hb_024074_020--Hb_012651_010 Hb_000172_510 Hb_000172_510 Hb_024074_020--Hb_000172_510 Hb_000984_310--Hb_001486_190 Hb_001051_070 Hb_001051_070 Hb_000984_310--Hb_001051_070 Hb_000984_310--Hb_012651_010 Hb_000836_280 Hb_000836_280 Hb_000984_310--Hb_000836_280 Hb_000679_100 Hb_000679_100 Hb_000984_310--Hb_000679_100 Hb_000140_350 Hb_000140_350 Hb_000984_310--Hb_000140_350 Hb_000291_160--Hb_002660_110 Hb_000739_200 Hb_000739_200 Hb_000291_160--Hb_000739_200 Hb_026740_020 Hb_026740_020 Hb_000291_160--Hb_026740_020 Hb_001999_100 Hb_001999_100 Hb_000291_160--Hb_001999_100 Hb_001217_010 Hb_001217_010 Hb_000291_160--Hb_001217_010 Hb_001124_220 Hb_001124_220 Hb_162547_010--Hb_001124_220 Hb_126757_010 Hb_126757_010 Hb_162547_010--Hb_126757_010 Hb_003925_020 Hb_003925_020 Hb_162547_010--Hb_003925_020 Hb_009646_040 Hb_009646_040 Hb_162547_010--Hb_009646_040 Hb_002272_280 Hb_002272_280 Hb_162547_010--Hb_002272_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.63661 4.28488 2.16118 24.4906 3.68679 5.54918
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.50182 3.17472 10.6309 2.23803 4.19996

CAGE analysis