Hb_004117_130

Information

Type -
Description -
Location Contig4117: 94552-99945
Sequence    

Annotation

kegg
ID rcu:RCOM_1057750
description hypothetical protein
nr
ID XP_012091047.1
description PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JDD1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00653 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40756: 94529-99949 , PASA_asmbl_40757: 100646-100988
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_130 0.0 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
2 Hb_002716_130 0.0606246014 - - PREDICTED: uncharacterized protein LOC105645470 isoform X2 [Jatropha curcas]
3 Hb_020719_030 0.0606747633 - - PREDICTED: ER membrane protein complex subunit 3-like [Jatropha curcas]
4 Hb_000260_170 0.0617968818 - - PREDICTED: putative zinc transporter At3g08650 [Cucumis sativus]
5 Hb_000933_090 0.0640362921 - - PREDICTED: probable protein S-acyltransferase 22 [Jatropha curcas]
6 Hb_007044_080 0.0673815506 - - PREDICTED: transmembrane protein 33 homolog [Jatropha curcas]
7 Hb_000023_220 0.067470893 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 18 isoform X1 [Jatropha curcas]
8 Hb_000212_240 0.0684493639 - - short-chain dehydrogenase, putative [Ricinus communis]
9 Hb_002671_100 0.0730616951 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]
10 Hb_144598_030 0.0772276017 - - PREDICTED: mitotic apparatus protein p62 [Jatropha curcas]
11 Hb_003090_080 0.0792215476 transcription factor TF Family: MYB PREDICTED: myb-like protein B [Jatropha curcas]
12 Hb_103012_010 0.0810248594 - - PREDICTED: uncharacterized protein LOC105638878 [Jatropha curcas]
13 Hb_000085_160 0.0827310598 - - hypothetical protein CICLE_v10009012mg [Citrus clementina]
14 Hb_000193_190 0.0832381555 - - PREDICTED: dnaJ homolog subfamily C member 16 [Jatropha curcas]
15 Hb_007594_130 0.0834195685 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
16 Hb_001866_110 0.0834466328 - - PREDICTED: trihelix transcription factor GT-3b-like [Jatropha curcas]
17 Hb_009467_060 0.0855268925 - - PREDICTED: chromo domain-containing protein LHP1 isoform X1 [Jatropha curcas]
18 Hb_007059_010 0.0863646353 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
19 Hb_000025_110 0.0865585679 - - hypothetical protein JCGZ_22722 [Jatropha curcas]
20 Hb_001946_010 0.0867819684 - - CBL-interacting serine/threonine-protein kinase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004117_130 Hb_004117_130 Hb_002716_130 Hb_002716_130 Hb_004117_130--Hb_002716_130 Hb_020719_030 Hb_020719_030 Hb_004117_130--Hb_020719_030 Hb_000260_170 Hb_000260_170 Hb_004117_130--Hb_000260_170 Hb_000933_090 Hb_000933_090 Hb_004117_130--Hb_000933_090 Hb_007044_080 Hb_007044_080 Hb_004117_130--Hb_007044_080 Hb_000023_220 Hb_000023_220 Hb_004117_130--Hb_000023_220 Hb_000010_330 Hb_000010_330 Hb_002716_130--Hb_000010_330 Hb_000085_160 Hb_000085_160 Hb_002716_130--Hb_000085_160 Hb_000212_240 Hb_000212_240 Hb_002716_130--Hb_000212_240 Hb_006252_040 Hb_006252_040 Hb_002716_130--Hb_006252_040 Hb_007317_110 Hb_007317_110 Hb_002716_130--Hb_007317_110 Hb_002272_180 Hb_002272_180 Hb_020719_030--Hb_002272_180 Hb_033834_060 Hb_033834_060 Hb_020719_030--Hb_033834_060 Hb_001488_410 Hb_001488_410 Hb_020719_030--Hb_001488_410 Hb_020719_030--Hb_000260_170 Hb_103012_010 Hb_103012_010 Hb_020719_030--Hb_103012_010 Hb_001946_010 Hb_001946_010 Hb_000260_170--Hb_001946_010 Hb_000260_170--Hb_103012_010 Hb_040262_010 Hb_040262_010 Hb_000260_170--Hb_040262_010 Hb_002671_100 Hb_002671_100 Hb_000260_170--Hb_002671_100 Hb_000933_090--Hb_007044_080 Hb_004837_190 Hb_004837_190 Hb_000933_090--Hb_004837_190 Hb_000051_070 Hb_000051_070 Hb_000933_090--Hb_000051_070 Hb_001369_420 Hb_001369_420 Hb_000933_090--Hb_001369_420 Hb_000358_150 Hb_000358_150 Hb_000933_090--Hb_000358_150 Hb_000429_200 Hb_000429_200 Hb_007044_080--Hb_000429_200 Hb_007044_080--Hb_000023_220 Hb_028390_010 Hb_028390_010 Hb_007044_080--Hb_028390_010 Hb_001199_020 Hb_001199_020 Hb_007044_080--Hb_001199_020 Hb_000023_220--Hb_000085_160 Hb_000193_190 Hb_000193_190 Hb_000023_220--Hb_000193_190 Hb_000205_100 Hb_000205_100 Hb_000023_220--Hb_000205_100 Hb_000011_200 Hb_000011_200 Hb_000023_220--Hb_000011_200 Hb_106371_010 Hb_106371_010 Hb_000023_220--Hb_106371_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
21.3982 9.98442 8.22756 19.9971 31.3186 36.094
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.0258 17.7036 17.4946 18.0395 15.4737

CAGE analysis