Hb_004117_140

Information

Type -
Description -
Location Contig4117: 100208-101758
Sequence    

Annotation

kegg
ID pop:POPTR_0016s14370g
description POPTRDRAFT_577179; hypothetical protein
nr
ID XP_011002598.1
description PREDICTED: putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial [Populus euphratica]
swissprot
ID Q3ECK2
description Pentatricopeptide repeat-containing protein At1g62680, mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2 SV=2
trembl
ID B9IGT2
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s14370g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_140 0.0 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g16710, mitochondrial [Populus euphratica]
2 Hb_006816_430 0.0764090282 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
3 Hb_027346_010 0.0841996677 - - -
4 Hb_000291_050 0.0937224577 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105638874 isoform X1 [Jatropha curcas]
5 Hb_000281_090 0.0943426573 transcription factor TF Family: SNF2 hypothetical protein PRUPE_ppa000063mg [Prunus persica]
6 Hb_000574_400 0.0968556073 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g15930 [Jatropha curcas]
7 Hb_001205_230 0.1003842135 - - PREDICTED: acidic leucine-rich nuclear phosphoprotein 32-related protein [Jatropha curcas]
8 Hb_001123_260 0.1012682262 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 3-like [Jatropha curcas]
9 Hb_005496_130 0.1046120071 - - PREDICTED: activating signal cointegrator 1 complex subunit 2 isoform X2 [Jatropha curcas]
10 Hb_000031_170 0.1049735966 - - PREDICTED: abnormal long morphology protein 1 isoform X1 [Jatropha curcas]
11 Hb_008221_180 0.1099253601 - - PREDICTED: uncharacterized protein LOC105644223 isoform X1 [Jatropha curcas]
12 Hb_001671_010 0.1107247149 - - PREDICTED: U-box domain-containing protein 44-like [Jatropha curcas]
13 Hb_004162_090 0.1107392589 transcription factor TF Family: MYB PREDICTED: transcription factor DIVARICATA [Jatropha curcas]
14 Hb_009486_060 0.1109022488 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
15 Hb_035755_010 0.1121407151 - - unknown [Populus trichocarpa]
16 Hb_001004_060 0.1124850691 - - PREDICTED: uncharacterized protein LOC105630220 isoform X4 [Jatropha curcas]
17 Hb_000265_230 0.1147418392 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105643603 isoform X1 [Jatropha curcas]
18 Hb_003203_030 0.1150968939 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
19 Hb_000753_200 0.1151360443 - - PREDICTED: putative ATP-dependent helicase hrq1 [Jatropha curcas]
20 Hb_000317_050 0.1159406158 - - formiminotransferase-cyclodeaminase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004117_140 Hb_004117_140 Hb_006816_430 Hb_006816_430 Hb_004117_140--Hb_006816_430 Hb_027346_010 Hb_027346_010 Hb_004117_140--Hb_027346_010 Hb_000291_050 Hb_000291_050 Hb_004117_140--Hb_000291_050 Hb_000281_090 Hb_000281_090 Hb_004117_140--Hb_000281_090 Hb_000574_400 Hb_000574_400 Hb_004117_140--Hb_000574_400 Hb_001205_230 Hb_001205_230 Hb_004117_140--Hb_001205_230 Hb_004108_100 Hb_004108_100 Hb_006816_430--Hb_004108_100 Hb_003203_030 Hb_003203_030 Hb_006816_430--Hb_003203_030 Hb_000265_230 Hb_000265_230 Hb_006816_430--Hb_000265_230 Hb_001123_260 Hb_001123_260 Hb_006816_430--Hb_001123_260 Hb_006816_430--Hb_027346_010 Hb_027346_010--Hb_001205_230 Hb_003470_080 Hb_003470_080 Hb_027346_010--Hb_003470_080 Hb_009486_060 Hb_009486_060 Hb_027346_010--Hb_009486_060 Hb_027346_010--Hb_000281_090 Hb_027346_010--Hb_000291_050 Hb_002725_120 Hb_002725_120 Hb_000291_050--Hb_002725_120 Hb_005779_080 Hb_005779_080 Hb_000291_050--Hb_005779_080 Hb_000165_250 Hb_000165_250 Hb_000291_050--Hb_000165_250 Hb_006649_050 Hb_006649_050 Hb_000291_050--Hb_006649_050 Hb_005496_130 Hb_005496_130 Hb_000291_050--Hb_005496_130 Hb_001004_060 Hb_001004_060 Hb_000291_050--Hb_001004_060 Hb_000281_090--Hb_001205_230 Hb_007943_110 Hb_007943_110 Hb_000281_090--Hb_007943_110 Hb_001008_120 Hb_001008_120 Hb_000281_090--Hb_001008_120 Hb_000281_090--Hb_001004_060 Hb_004162_090 Hb_004162_090 Hb_000281_090--Hb_004162_090 Hb_002234_170 Hb_002234_170 Hb_000574_400--Hb_002234_170 Hb_002783_040 Hb_002783_040 Hb_000574_400--Hb_002783_040 Hb_000574_400--Hb_009486_060 Hb_000574_400--Hb_027346_010 Hb_000574_400--Hb_001205_230 Hb_011671_410 Hb_011671_410 Hb_000574_400--Hb_011671_410 Hb_001205_230--Hb_001004_060 Hb_009767_080 Hb_009767_080 Hb_001205_230--Hb_009767_080 Hb_001205_230--Hb_009486_060 Hb_000035_290 Hb_000035_290 Hb_001205_230--Hb_000035_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.72021 2.70712 0.893592 0.851472 2.20119 2.51209
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.98348 2.03335 1.73462 1.29237 3.71487

CAGE analysis