Hb_004117_160

Information

Type transcription factor
Description TF Family: B3
Location Contig4117: 107869-115378
Sequence    

Annotation

kegg
ID pop:POPTR_0016s14350g
description POPTRDRAFT_577177; hypothetical protein
nr
ID KHG15963.1
description B3 domain-containing transcription repressor VAL2 -like protein [Gossypium arboreum]
swissprot
ID Q5CCK4
description B3 domain-containing transcription repressor VAL2 OS=Arabidopsis thaliana GN=VAL2 PE=2 SV=1
trembl
ID A0A0B0NN34
description B3 domain-containing transcription repressor VAL2-like protein OS=Gossypium arboreum GN=F383_08594 PE=4 SV=1
Gene Ontology
ID GO:0005634
description b3 domain-containing transcription repressor val2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40760: 109204-110265 , PASA_asmbl_40761: 111316-111559
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_160 0.0 transcription factor TF Family: B3 B3 domain-containing transcription repressor VAL2 -like protein [Gossypium arboreum]
2 Hb_000107_200 0.100296365 - - hypothetical protein B456_005G214800 [Gossypium raimondii]
3 Hb_001948_130 0.1024704395 - - PREDICTED: uncharacterized protein LOC105638579 [Jatropha curcas]
4 Hb_003010_020 0.1026045726 - - PREDICTED: probable inactive heme oxygenase 2, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_032050_040 0.1048777432 - - PREDICTED: protein S-acyltransferase 8-like [Jatropha curcas]
6 Hb_000022_020 0.1051976486 - - hypothetical protein CICLE_v10020565mg [Citrus clementina]
7 Hb_152202_010 0.1058787801 - - PREDICTED: inositol-tetrakisphosphate 1-kinase 1 [Jatropha curcas]
8 Hb_007919_100 0.1064060917 transcription factor TF Family: SET PREDICTED: uncharacterized protein LOC105635137 [Jatropha curcas]
9 Hb_001018_130 0.1065184686 - - PREDICTED: uncharacterized protein LOC105638260 [Jatropha curcas]
10 Hb_006373_040 0.1089392597 - - PREDICTED: potassium transporter 11-like [Nicotiana tomentosiformis]
11 Hb_000362_150 0.1153786942 - - PREDICTED: homogentisate 1,2-dioxygenase [Jatropha curcas]
12 Hb_006909_070 0.1158351714 - - ABC transporter family protein [Hevea brasiliensis]
13 Hb_011918_040 0.116429629 - - PREDICTED: dnaJ protein homolog 2 [Jatropha curcas]
14 Hb_004157_100 0.1170349627 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
15 Hb_012194_050 0.1175029782 - - Aspartyl aminopeptidase, putative [Ricinus communis]
16 Hb_012340_070 0.1177132001 - - Gamma-secretase subunit APH1-like family protein [Populus trichocarpa]
17 Hb_000107_210 0.1177408349 - - PREDICTED: ankyrin repeat domain-containing protein 2 [Jatropha curcas]
18 Hb_009529_030 0.1177550004 - - PREDICTED: transmembrane protein 120 homolog [Jatropha curcas]
19 Hb_008120_010 0.1200089938 - - PREDICTED: polyadenylate-binding protein-interacting protein 9-like [Populus euphratica]
20 Hb_002235_170 0.120438839 - - hypothetical protein CISIN_1g010208mg [Citrus sinensis]

Gene co-expression network

sample Hb_004117_160 Hb_004117_160 Hb_000107_200 Hb_000107_200 Hb_004117_160--Hb_000107_200 Hb_001948_130 Hb_001948_130 Hb_004117_160--Hb_001948_130 Hb_003010_020 Hb_003010_020 Hb_004117_160--Hb_003010_020 Hb_032050_040 Hb_032050_040 Hb_004117_160--Hb_032050_040 Hb_000022_020 Hb_000022_020 Hb_004117_160--Hb_000022_020 Hb_152202_010 Hb_152202_010 Hb_004117_160--Hb_152202_010 Hb_001018_130 Hb_001018_130 Hb_000107_200--Hb_001018_130 Hb_008120_010 Hb_008120_010 Hb_000107_200--Hb_008120_010 Hb_002445_120 Hb_002445_120 Hb_000107_200--Hb_002445_120 Hb_002067_120 Hb_002067_120 Hb_000107_200--Hb_002067_120 Hb_000606_090 Hb_000606_090 Hb_000107_200--Hb_000606_090 Hb_001135_060 Hb_001135_060 Hb_000107_200--Hb_001135_060 Hb_017295_010 Hb_017295_010 Hb_001948_130--Hb_017295_010 Hb_000208_260 Hb_000208_260 Hb_001948_130--Hb_000208_260 Hb_001109_060 Hb_001109_060 Hb_001948_130--Hb_001109_060 Hb_000107_210 Hb_000107_210 Hb_001948_130--Hb_000107_210 Hb_029904_020 Hb_029904_020 Hb_001948_130--Hb_029904_020 Hb_000008_220 Hb_000008_220 Hb_001948_130--Hb_000008_220 Hb_001416_070 Hb_001416_070 Hb_003010_020--Hb_001416_070 Hb_003010_020--Hb_032050_040 Hb_002273_120 Hb_002273_120 Hb_003010_020--Hb_002273_120 Hb_003438_050 Hb_003438_050 Hb_003010_020--Hb_003438_050 Hb_012194_050 Hb_012194_050 Hb_003010_020--Hb_012194_050 Hb_006909_070 Hb_006909_070 Hb_003010_020--Hb_006909_070 Hb_007919_100 Hb_007919_100 Hb_032050_040--Hb_007919_100 Hb_032050_040--Hb_152202_010 Hb_032050_040--Hb_002273_120 Hb_002785_050 Hb_002785_050 Hb_032050_040--Hb_002785_050 Hb_000127_040 Hb_000127_040 Hb_032050_040--Hb_000127_040 Hb_002414_050 Hb_002414_050 Hb_000022_020--Hb_002414_050 Hb_000830_030 Hb_000830_030 Hb_000022_020--Hb_000830_030 Hb_000170_090 Hb_000170_090 Hb_000022_020--Hb_000170_090 Hb_004452_110 Hb_004452_110 Hb_000022_020--Hb_004452_110 Hb_001662_100 Hb_001662_100 Hb_000022_020--Hb_001662_100 Hb_000345_160 Hb_000345_160 Hb_000022_020--Hb_000345_160 Hb_152202_010--Hb_007919_100 Hb_152202_010--Hb_012194_050 Hb_000362_150 Hb_000362_150 Hb_152202_010--Hb_000362_150 Hb_001640_030 Hb_001640_030 Hb_152202_010--Hb_001640_030 Hb_001898_210 Hb_001898_210 Hb_152202_010--Hb_001898_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.53643 3.73881 2.91194 8.7989 4.62023 10.1117
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.88461 3.29435 2.27495 3.35666 6.30485

CAGE analysis