Hb_004117_180

Information

Type -
Description -
Location Contig4117: 123535-125500
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40767: 123594-126108
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_180 0.0 - - -
2 Hb_000193_350 0.1015223985 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
3 Hb_011016_090 0.1038262802 - - PREDICTED: 50S ribosomal protein L24, chloroplastic [Populus euphratica]
4 Hb_011174_010 0.1067805339 - - hypothetical protein JCGZ_10122 [Jatropha curcas]
5 Hb_000101_090 0.1189527323 - - PREDICTED: ferredoxin-thioredoxin reductase catalytic chain, chloroplastic [Camelina sativa]
6 Hb_102156_010 0.1191220746 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002272_260 0.1229867956 - - -
8 Hb_073367_010 0.1238192684 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
9 Hb_000001_040 0.1256871951 - - unnamed protein product [Coffea canephora]
10 Hb_002368_040 0.1271651736 - - hypothetical protein PRUPE_ppa019172mg [Prunus persica]
11 Hb_000189_530 0.1303995588 - - 40S ribosomal protein S24B [Hevea brasiliensis]
12 Hb_004453_150 0.1322926117 - - BnaC02g13240D [Brassica napus]
13 Hb_000032_540 0.1335964941 - - PREDICTED: mediator-associated protein 3-like [Jatropha curcas]
14 Hb_001976_050 0.1385674936 - - PREDICTED: protein SKIP34 [Jatropha curcas]
15 Hb_009543_030 0.1403847737 - - prefoldin subunit 1 [Jatropha curcas]
16 Hb_003919_010 0.1404535791 - - PREDICTED: peptidyl-tRNA hydrolase, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_000175_400 0.1405756438 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001057_050 0.1412316753 - - hypothetical protein POPTR_0003s15960g, partial [Populus trichocarpa]
19 Hb_136731_010 0.1422519187 - - PREDICTED: uncharacterized protein LOC105628378 isoform X4 [Jatropha curcas]
20 Hb_000622_100 0.142965905 - - PREDICTED: pre-rRNA-processing protein RIX1-like [Jatropha curcas]

Gene co-expression network

sample Hb_004117_180 Hb_004117_180 Hb_000193_350 Hb_000193_350 Hb_004117_180--Hb_000193_350 Hb_011016_090 Hb_011016_090 Hb_004117_180--Hb_011016_090 Hb_011174_010 Hb_011174_010 Hb_004117_180--Hb_011174_010 Hb_000101_090 Hb_000101_090 Hb_004117_180--Hb_000101_090 Hb_102156_010 Hb_102156_010 Hb_004117_180--Hb_102156_010 Hb_002272_260 Hb_002272_260 Hb_004117_180--Hb_002272_260 Hb_000175_400 Hb_000175_400 Hb_000193_350--Hb_000175_400 Hb_003687_020 Hb_003687_020 Hb_000193_350--Hb_003687_020 Hb_005224_050 Hb_005224_050 Hb_000193_350--Hb_005224_050 Hb_000189_530 Hb_000189_530 Hb_000193_350--Hb_000189_530 Hb_017711_010 Hb_017711_010 Hb_000193_350--Hb_017711_010 Hb_000193_350--Hb_011016_090 Hb_011016_090--Hb_000189_530 Hb_011016_090--Hb_000175_400 Hb_002259_030 Hb_002259_030 Hb_011016_090--Hb_002259_030 Hb_004453_150 Hb_004453_150 Hb_011016_090--Hb_004453_150 Hb_000032_540 Hb_000032_540 Hb_011016_090--Hb_000032_540 Hb_011174_010--Hb_002272_260 Hb_000622_100 Hb_000622_100 Hb_011174_010--Hb_000622_100 Hb_011174_010--Hb_011016_090 Hb_073367_010 Hb_073367_010 Hb_011174_010--Hb_073367_010 Hb_000771_100 Hb_000771_100 Hb_011174_010--Hb_000771_100 Hb_000101_090--Hb_002272_260 Hb_009543_030 Hb_009543_030 Hb_000101_090--Hb_009543_030 Hb_000101_090--Hb_004453_150 Hb_002301_280 Hb_002301_280 Hb_000101_090--Hb_002301_280 Hb_000442_160 Hb_000442_160 Hb_000101_090--Hb_000442_160 Hb_004143_110 Hb_004143_110 Hb_000101_090--Hb_004143_110 Hb_002259_150 Hb_002259_150 Hb_102156_010--Hb_002259_150 Hb_102156_010--Hb_000175_400 Hb_102156_010--Hb_000193_350 Hb_102156_010--Hb_000032_540 Hb_102156_010--Hb_002272_260 Hb_102156_010--Hb_004453_150 Hb_002272_260--Hb_000771_100 Hb_002272_260--Hb_004453_150 Hb_000676_290 Hb_000676_290 Hb_002272_260--Hb_000676_290 Hb_002272_260--Hb_002301_280 Hb_002272_260--Hb_002259_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
43.7137 7.72655 10.334 31.8578 40.5347 158.355
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
76.9873 79.2032 28.1247 14.3271 0.962416

CAGE analysis