Hb_004117_230

Information

Type -
Description -
Location Contig4117: 164135-164903
Sequence    

Annotation

kegg
ID cic:CICLE_v10012953mg
description hypothetical protein
nr
ID AAL25839.1
description lipid transfer precursor protein [Hevea brasiliensis]
swissprot
ID Q9M5X7
description Non-specific lipid-transfer protein OS=Malus domestica GN=MALD3 PE=1 SV=1
trembl
ID Q8RYA8
description Non-specific lipid-transfer protein OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0008289
description lipid transfer protein precursor

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40771: 164025-164910
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_230 0.0 - - lipid transfer precursor protein [Hevea brasiliensis]
2 Hb_004920_150 0.0621746781 - - conserved hypothetical protein [Ricinus communis]
3 Hb_034507_030 0.0660909063 - - PREDICTED: laccase-4-like [Jatropha curcas]
4 Hb_001014_180 0.0661192806 - - PREDICTED: probable beta-1,4-xylosyltransferase IRX10 [Jatropha curcas]
5 Hb_006483_020 0.0681582179 - - PREDICTED: PI-PLC X domain-containing protein At5g67130-like isoform X1 [Jatropha curcas]
6 Hb_007281_010 0.0704033079 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
7 Hb_000462_040 0.0837294866 - - ATSMC2, putative [Ricinus communis]
8 Hb_003972_070 0.0865584325 - - PREDICTED: cytochrome P450 85A1-like [Citrus sinensis]
9 Hb_002739_140 0.0886872038 - - PREDICTED: protein TPX2 [Jatropha curcas]
10 Hb_004994_230 0.0888761337 transcription factor TF Family: LIM Pollen-specific protein SF3, putative [Ricinus communis]
11 Hb_038927_020 0.089460555 - - PREDICTED: rac-like GTP-binding protein RAC13 [Cucumis melo]
12 Hb_001080_240 0.0906104525 - - hypothetical protein PHAVU_001G152800g [Phaseolus vulgaris]
13 Hb_001712_030 0.0921200834 - - PREDICTED: lysine-rich arabinogalactan protein 19 [Jatropha curcas]
14 Hb_002311_010 0.093433063 - - PREDICTED: chitinase-like protein 2 [Jatropha curcas]
15 Hb_000090_010 0.0935642492 - - hypothetical protein JCGZ_22567 [Jatropha curcas]
16 Hb_000311_100 0.0967003939 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000193_320 0.1000446356 - - conserved hypothetical protein [Ricinus communis]
18 Hb_158092_090 0.1009861134 - - zinc finger protein, putative [Ricinus communis]
19 Hb_000776_090 0.1040284046 - - PREDICTED: COBRA-like protein 4 [Jatropha curcas]
20 Hb_000805_060 0.1061176489 - - laccase, putative [Ricinus communis]

Gene co-expression network

sample Hb_004117_230 Hb_004117_230 Hb_004920_150 Hb_004920_150 Hb_004117_230--Hb_004920_150 Hb_034507_030 Hb_034507_030 Hb_004117_230--Hb_034507_030 Hb_001014_180 Hb_001014_180 Hb_004117_230--Hb_001014_180 Hb_006483_020 Hb_006483_020 Hb_004117_230--Hb_006483_020 Hb_007281_010 Hb_007281_010 Hb_004117_230--Hb_007281_010 Hb_000462_040 Hb_000462_040 Hb_004117_230--Hb_000462_040 Hb_002739_140 Hb_002739_140 Hb_004920_150--Hb_002739_140 Hb_003972_070 Hb_003972_070 Hb_004920_150--Hb_003972_070 Hb_038927_020 Hb_038927_020 Hb_004920_150--Hb_038927_020 Hb_010488_050 Hb_010488_050 Hb_004920_150--Hb_010488_050 Hb_000776_090 Hb_000776_090 Hb_004920_150--Hb_000776_090 Hb_004994_230 Hb_004994_230 Hb_034507_030--Hb_004994_230 Hb_034507_030--Hb_006483_020 Hb_034507_030--Hb_001014_180 Hb_000090_010 Hb_000090_010 Hb_034507_030--Hb_000090_010 Hb_034507_030--Hb_000462_040 Hb_034507_030--Hb_007281_010 Hb_001014_180--Hb_007281_010 Hb_001014_180--Hb_003972_070 Hb_001014_180--Hb_000462_040 Hb_002311_010 Hb_002311_010 Hb_001014_180--Hb_002311_010 Hb_006483_020--Hb_004994_230 Hb_006483_020--Hb_000462_040 Hb_006483_020--Hb_000090_010 Hb_006483_020--Hb_007281_010 Hb_007281_010--Hb_002311_010 Hb_007281_010--Hb_038927_020 Hb_007281_010--Hb_000462_040 Hb_001712_030 Hb_001712_030 Hb_007281_010--Hb_001712_030 Hb_000462_040--Hb_001712_030 Hb_001123_300 Hb_001123_300 Hb_000462_040--Hb_001123_300 Hb_008705_080 Hb_008705_080 Hb_000462_040--Hb_008705_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 61.0455 46.3709 1555.59 0.0379583 0.360263
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.80308 1.16698 0 37.2126 1600.13

CAGE analysis