Hb_004117_260

Information

Type -
Description -
Location Contig4117: 174897-180245
Sequence    

Annotation

kegg
ID rcu:RCOM_0377350
description hypothetical protein
nr
ID XP_002532866.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9C7N2
description MACPF domain-containing protein CAD1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1
trembl
ID B9T3P7
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0377350 PE=4 SV=1
Gene Ontology
ID GO:0005622
description macpf domain-containing protein cad1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40774: 174906-180151 , PASA_asmbl_40777: 180948-184266 , PASA_asmbl_40779: 180948-184266
cDNA
(Sanger)
(ID:Location)		 034_P05.ab1: 178400-180151

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_260 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000393_020 0.0604548518 - - lipid binding protein, putative [Ricinus communis]
3 Hb_003657_010 0.0701903406 - - conserved hypothetical protein [Ricinus communis]
4 Hb_050622_050 0.0717309672 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
5 Hb_006017_010 0.0717409543 - - PREDICTED: alkylated DNA repair protein alkB homolog 8 [Jatropha curcas]
6 Hb_000926_090 0.0758505366 - - PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Jatropha curcas]
7 Hb_001314_070 0.0783181842 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000297_010 0.0789591531 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
9 Hb_022256_020 0.0797402873 - - PREDICTED: pentatricopeptide repeat-containing protein At4g35130, chloroplastic [Jatropha curcas]
10 Hb_004208_030 0.0834334972 transcription factor TF Family: MYB-related PREDICTED: TSL-kinase interacting protein 1 [Jatropha curcas]
11 Hb_000349_260 0.0836027789 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
12 Hb_002450_020 0.084789571 - - PREDICTED: probable transcriptional regulator SLK2 [Jatropha curcas]
13 Hb_000340_180 0.0853056245 - - PREDICTED: mitochondrial ubiquitin ligase activator of NFKB 1 [Jatropha curcas]
14 Hb_000549_040 0.0867855151 - - PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like isoform X1 [Jatropha curcas]
15 Hb_005054_110 0.0874903858 - - PREDICTED: adenylosuccinate lyase-like [Jatropha curcas]
16 Hb_000041_100 0.0889194519 - - PREDICTED: zinc finger CCCH domain-containing protein 41 [Jatropha curcas]
17 Hb_015934_040 0.0905918788 - - PREDICTED: protein Hook homolog 3-like [Jatropha curcas]
18 Hb_000925_130 0.0909902602 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At3g05675-like isoform X2 [Jatropha curcas]
19 Hb_022250_060 0.0922575458 - - PREDICTED: calcium-binding mitochondrial carrier protein SCaMC-1-like isoform X1 [Jatropha curcas]
20 Hb_000008_440 0.0930608171 - - PREDICTED: probable E3 ubiquitin-protein ligase LOG2 [Jatropha curcas]

Gene co-expression network

sample Hb_004117_260 Hb_004117_260 Hb_000393_020 Hb_000393_020 Hb_004117_260--Hb_000393_020 Hb_003657_010 Hb_003657_010 Hb_004117_260--Hb_003657_010 Hb_050622_050 Hb_050622_050 Hb_004117_260--Hb_050622_050 Hb_006017_010 Hb_006017_010 Hb_004117_260--Hb_006017_010 Hb_000926_090 Hb_000926_090 Hb_004117_260--Hb_000926_090 Hb_001314_070 Hb_001314_070 Hb_004117_260--Hb_001314_070 Hb_004078_040 Hb_004078_040 Hb_000393_020--Hb_004078_040 Hb_000349_260 Hb_000349_260 Hb_000393_020--Hb_000349_260 Hb_001300_150 Hb_001300_150 Hb_000393_020--Hb_001300_150 Hb_000928_070 Hb_000928_070 Hb_000393_020--Hb_000928_070 Hb_000393_020--Hb_001314_070 Hb_022256_020 Hb_022256_020 Hb_003657_010--Hb_022256_020 Hb_004208_030 Hb_004208_030 Hb_003657_010--Hb_004208_030 Hb_000197_250 Hb_000197_250 Hb_003657_010--Hb_000197_250 Hb_000008_440 Hb_000008_440 Hb_003657_010--Hb_000008_440 Hb_010068_080 Hb_010068_080 Hb_003657_010--Hb_010068_080 Hb_050622_050--Hb_006017_010 Hb_001617_050 Hb_001617_050 Hb_050622_050--Hb_001617_050 Hb_000297_010 Hb_000297_010 Hb_050622_050--Hb_000297_010 Hb_002110_150 Hb_002110_150 Hb_050622_050--Hb_002110_150 Hb_001318_270 Hb_001318_270 Hb_050622_050--Hb_001318_270 Hb_007416_330 Hb_007416_330 Hb_006017_010--Hb_007416_330 Hb_105105_020 Hb_105105_020 Hb_006017_010--Hb_105105_020 Hb_006915_030 Hb_006915_030 Hb_006017_010--Hb_006915_030 Hb_015934_040 Hb_015934_040 Hb_006017_010--Hb_015934_040 Hb_002754_010 Hb_002754_010 Hb_000926_090--Hb_002754_010 Hb_000926_090--Hb_022256_020 Hb_007317_010 Hb_007317_010 Hb_000926_090--Hb_007317_010 Hb_000484_130 Hb_000484_130 Hb_000926_090--Hb_000484_130 Hb_164010_040 Hb_164010_040 Hb_000926_090--Hb_164010_040 Hb_022250_060 Hb_022250_060 Hb_000926_090--Hb_022250_060 Hb_000603_080 Hb_000603_080 Hb_001314_070--Hb_000603_080 Hb_000250_060 Hb_000250_060 Hb_001314_070--Hb_000250_060 Hb_010812_120 Hb_010812_120 Hb_001314_070--Hb_010812_120 Hb_000483_260 Hb_000483_260 Hb_001314_070--Hb_000483_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.9246 22.1975 21.4264 18.7646 14.7585 17.7269
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.945 24.2712 36.9211 19.2093 19.0972

CAGE analysis