Hb_004117_280

Information

Type -
Description -
Location Contig4117: 192503-195878
Sequence    

Annotation

kegg
ID rcu:RCOM_0377030
description multidrug resistance pump, putative
nr
ID KDP22774.1
description hypothetical protein JCGZ_00361 [Jatropha curcas]
swissprot
ID Q3V050
description Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1
trembl
ID A0A067JTC3
description MATE efflux family protein OS=Jatropha curcas GN=JCGZ_00361 PE=3 SV=1
Gene Ontology
ID GO:0005886
description mate efflux family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_280 0.0 - - hypothetical protein JCGZ_00361 [Jatropha curcas]
2 Hb_004611_050 0.0804344071 - - PREDICTED: uncharacterized protein LOC105628744 [Jatropha curcas]
3 Hb_003092_020 0.0867742808 - - PREDICTED: heptahelical transmembrane protein 1 [Jatropha curcas]
4 Hb_002817_030 0.1017151463 - - hypothetical protein POPTR_0001s39195g [Populus trichocarpa]
5 Hb_002490_060 0.1061680543 - - PREDICTED: uncharacterized protein LOC105638743 [Jatropha curcas]
6 Hb_000627_040 0.1105231872 - - leucine-rich repeat protein, putative [Ricinus communis]
7 Hb_000163_180 0.1127774839 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
8 Hb_008749_010 0.1161009834 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
9 Hb_026240_020 0.1174906693 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance protein At1g59780 [Jatropha curcas]
10 Hb_000731_280 0.1196681455 - - PREDICTED: uncharacterized protein LOC105649351 isoform X1 [Jatropha curcas]
11 Hb_000365_430 0.1216034126 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]
12 Hb_000199_040 0.1220661234 desease resistance Gene Name: TIR PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
13 Hb_030982_050 0.124322784 - - PREDICTED: gamma-glutamyl hydrolase 2-like [Jatropha curcas]
14 Hb_005730_110 0.1264710183 - - PREDICTED: inactive protein kinase SELMODRAFT_444075 [Jatropha curcas]
15 Hb_007237_020 0.1275162006 - - PREDICTED: protein trichome birefringence-like 23 [Jatropha curcas]
16 Hb_001366_290 0.1288492538 - - Alpha-expansin 1 precursor, putative [Ricinus communis]
17 Hb_000990_040 0.1291692089 transcription factor TF Family: CPP PREDICTED: protein tesmin/TSO1-like CXC 7 [Jatropha curcas]
18 Hb_001638_150 0.1311310809 - - acyltransferase, putative [Ricinus communis]
19 Hb_005892_040 0.1311725332 - - hypothetical protein JCGZ_02368 [Jatropha curcas]
20 Hb_004228_070 0.1322359904 - - PREDICTED: uncharacterized protein LOC103338699 [Prunus mume]

Gene co-expression network

sample Hb_004117_280 Hb_004117_280 Hb_004611_050 Hb_004611_050 Hb_004117_280--Hb_004611_050 Hb_003092_020 Hb_003092_020 Hb_004117_280--Hb_003092_020 Hb_002817_030 Hb_002817_030 Hb_004117_280--Hb_002817_030 Hb_002490_060 Hb_002490_060 Hb_004117_280--Hb_002490_060 Hb_000627_040 Hb_000627_040 Hb_004117_280--Hb_000627_040 Hb_000163_180 Hb_000163_180 Hb_004117_280--Hb_000163_180 Hb_093364_010 Hb_093364_010 Hb_004611_050--Hb_093364_010 Hb_000990_040 Hb_000990_040 Hb_004611_050--Hb_000990_040 Hb_029095_010 Hb_029095_010 Hb_004611_050--Hb_029095_010 Hb_000020_020 Hb_000020_020 Hb_004611_050--Hb_000020_020 Hb_000185_170 Hb_000185_170 Hb_004611_050--Hb_000185_170 Hb_026240_020 Hb_026240_020 Hb_003092_020--Hb_026240_020 Hb_000365_430 Hb_000365_430 Hb_003092_020--Hb_000365_430 Hb_142026_010 Hb_142026_010 Hb_003092_020--Hb_142026_010 Hb_000098_260 Hb_000098_260 Hb_003092_020--Hb_000098_260 Hb_003454_050 Hb_003454_050 Hb_003092_020--Hb_003454_050 Hb_007237_020 Hb_007237_020 Hb_002817_030--Hb_007237_020 Hb_027337_010 Hb_027337_010 Hb_002817_030--Hb_027337_010 Hb_000914_140 Hb_000914_140 Hb_002817_030--Hb_000914_140 Hb_002311_500 Hb_002311_500 Hb_002817_030--Hb_002311_500 Hb_003573_050 Hb_003573_050 Hb_002817_030--Hb_003573_050 Hb_002490_060--Hb_000627_040 Hb_006922_020 Hb_006922_020 Hb_002490_060--Hb_006922_020 Hb_001366_290 Hb_001366_290 Hb_002490_060--Hb_001366_290 Hb_006196_030 Hb_006196_030 Hb_002490_060--Hb_006196_030 Hb_002490_060--Hb_007237_020 Hb_007123_010 Hb_007123_010 Hb_002490_060--Hb_007123_010 Hb_000627_040--Hb_007237_020 Hb_121313_010 Hb_121313_010 Hb_000627_040--Hb_121313_010 Hb_005730_110 Hb_005730_110 Hb_000627_040--Hb_005730_110 Hb_002053_180 Hb_002053_180 Hb_000627_040--Hb_002053_180 Hb_000627_040--Hb_006922_020 Hb_000365_180 Hb_000365_180 Hb_000163_180--Hb_000365_180 Hb_000163_180--Hb_142026_010 Hb_008749_010 Hb_008749_010 Hb_000163_180--Hb_008749_010 Hb_030982_050 Hb_030982_050 Hb_000163_180--Hb_030982_050 Hb_000163_180--Hb_003092_020 Hb_106089_010 Hb_106089_010 Hb_000163_180--Hb_106089_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0412103 0.114681 0.0746754 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0355813 0.0468294

CAGE analysis