Hb_004117_290

Information

Type -
Description -
Location Contig4117: 203034-210338
Sequence    

Annotation

kegg
ID rcu:RCOM_0376710
description hypothetical protein
nr
ID XP_002532862.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T3P3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0376710 PE=4 SV=1
Gene Ontology
ID GO:0005886
description conserved hypothetical protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40784: 208792-210239
cDNA
(Sanger)
(ID:Location)		 004_O17.ab1: 208792-210239 , 044_B18.ab1: 208792-210239

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_290 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000365_380 0.05704291 - - conserved hypothetical protein [Ricinus communis]
3 Hb_025193_050 0.0896424682 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
4 Hb_000316_110 0.0901980587 - - Dolichyl-phosphate beta-glucosyltransferase, putative [Ricinus communis]
5 Hb_000928_240 0.0912430958 - - PREDICTED: uncharacterized protein LOC105632515 [Jatropha curcas]
6 Hb_004595_020 0.0924319079 - - PREDICTED: probable prefoldin subunit 5 [Jatropha curcas]
7 Hb_001584_070 0.0941112786 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000317_340 0.0948977602 - - conserved hypothetical protein [Ricinus communis]
9 Hb_003125_040 0.0955446305 - - PREDICTED: uncharacterized protein LOC105640201 isoform X1 [Jatropha curcas]
10 Hb_002311_320 0.0961178901 - - PREDICTED: mediator of RNA polymerase II transcription subunit 20a [Jatropha curcas]
11 Hb_003058_070 0.0970219394 - - PREDICTED: uncharacterized protein LOC105628964 [Jatropha curcas]
12 Hb_003057_050 0.097611877 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
13 Hb_000417_110 0.097766234 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
14 Hb_171900_050 0.1009280167 - - conserved hypothetical protein [Ricinus communis]
15 Hb_012515_010 0.1009757039 - - PREDICTED: 60S ribosomal protein L30-like [Gossypium raimondii]
16 Hb_001279_070 0.1027178706 - - PREDICTED: uncharacterized protein LOC105633300 [Jatropha curcas]
17 Hb_000723_090 0.1028357273 - - conserved hypothetical protein [Ricinus communis]
18 Hb_002942_020 0.1032423283 - - nucleotide binding protein, putative [Ricinus communis]
19 Hb_070986_010 0.1039834945 - - PREDICTED: macrophage erythroblast attacher [Jatropha curcas]
20 Hb_001019_090 0.1048292523 - - PREDICTED: uncharacterized protein LOC105639312 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_004117_290 Hb_004117_290 Hb_000365_380 Hb_000365_380 Hb_004117_290--Hb_000365_380 Hb_025193_050 Hb_025193_050 Hb_004117_290--Hb_025193_050 Hb_000316_110 Hb_000316_110 Hb_004117_290--Hb_000316_110 Hb_000928_240 Hb_000928_240 Hb_004117_290--Hb_000928_240 Hb_004595_020 Hb_004595_020 Hb_004117_290--Hb_004595_020 Hb_001584_070 Hb_001584_070 Hb_004117_290--Hb_001584_070 Hb_000365_380--Hb_001584_070 Hb_000317_340 Hb_000317_340 Hb_000365_380--Hb_000317_340 Hb_143629_230 Hb_143629_230 Hb_000365_380--Hb_143629_230 Hb_000365_380--Hb_025193_050 Hb_032202_090 Hb_032202_090 Hb_000365_380--Hb_032202_090 Hb_012515_010 Hb_012515_010 Hb_025193_050--Hb_012515_010 Hb_011139_020 Hb_011139_020 Hb_025193_050--Hb_011139_020 Hb_024650_050 Hb_024650_050 Hb_025193_050--Hb_024650_050 Hb_025193_050--Hb_004595_020 Hb_000152_430 Hb_000152_430 Hb_025193_050--Hb_000152_430 Hb_004453_150 Hb_004453_150 Hb_025193_050--Hb_004453_150 Hb_006569_020 Hb_006569_020 Hb_000316_110--Hb_006569_020 Hb_007166_050 Hb_007166_050 Hb_000316_110--Hb_007166_050 Hb_001019_090 Hb_001019_090 Hb_000316_110--Hb_001019_090 Hb_009711_030 Hb_009711_030 Hb_000316_110--Hb_009711_030 Hb_159558_030 Hb_159558_030 Hb_000316_110--Hb_159558_030 Hb_022250_040 Hb_022250_040 Hb_000316_110--Hb_022250_040 Hb_125000_010 Hb_125000_010 Hb_000928_240--Hb_125000_010 Hb_001824_070 Hb_001824_070 Hb_000928_240--Hb_001824_070 Hb_003878_190 Hb_003878_190 Hb_000928_240--Hb_003878_190 Hb_000703_140 Hb_000703_140 Hb_000928_240--Hb_000703_140 Hb_002097_110 Hb_002097_110 Hb_000928_240--Hb_002097_110 Hb_000318_380 Hb_000318_380 Hb_000928_240--Hb_000318_380 Hb_001840_120 Hb_001840_120 Hb_004595_020--Hb_001840_120 Hb_004595_020--Hb_012515_010 Hb_004595_020--Hb_011139_020 Hb_000465_060 Hb_000465_060 Hb_004595_020--Hb_000465_060 Hb_000479_180 Hb_000479_180 Hb_004595_020--Hb_000479_180 Hb_001584_070--Hb_000465_060 Hb_001584_070--Hb_001824_070 Hb_001584_070--Hb_012515_010 Hb_000417_110 Hb_000417_110 Hb_001584_070--Hb_000417_110 Hb_001383_060 Hb_001383_060 Hb_001584_070--Hb_001383_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.27258 1.46954 2.24575 3.25482 10.6038 11.8562
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.3282 15.3989 5.24184 2.61509 2.22109

CAGE analysis