Hb_004117_330

Information

Type -
Description -
Location Contig4117: 229867-230232
Sequence    

Annotation

kegg
ID rcu:RCOM_0376590
description hypothetical protein
nr
ID XP_002532860.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T3P1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0376590 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004117_330 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000413_080 0.1542537782 - - -
3 Hb_007575_090 0.1636554177 - - putative. proteolipid subunit of vacuolar H+ ATPase, partial [Zea mays]
4 Hb_005144_170 0.1705440452 - - PREDICTED: shugoshin-1-like isoform X2 [Jatropha curcas]
5 Hb_008185_020 0.1720094357 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
6 Hb_000302_100 0.1764493989 - - PREDICTED: uncharacterized protein LOC105766209 [Gossypium raimondii]
7 Hb_066514_010 0.1774332971 - - hypothetical protein RCOM_0204720 [Ricinus communis]
8 Hb_002272_200 0.1784178906 - - PREDICTED: GDSL esterase/lipase At1g54790 isoform X1 [Jatropha curcas]
9 Hb_001143_230 0.1851131779 - - beta-galactosidase family protein [Populus trichocarpa]
10 Hb_002490_030 0.189458608 - - conserved hypothetical protein [Ricinus communis]
11 Hb_011918_010 0.1897135356 - - hypothetical protein glysoja_041948 [Glycine soja]
12 Hb_007741_090 0.195115153 - - Autophagy-related 8f -like protein [Gossypium arboreum]
13 Hb_000521_070 0.2006803151 - - PREDICTED: uncharacterized protein LOC105650323 [Jatropha curcas]
14 Hb_104571_010 0.2030201859 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
15 Hb_002243_050 0.2031894507 - - PREDICTED: ion channel DMI1-like isoform X2 [Jatropha curcas]
16 Hb_001329_020 0.2032149966 - - PREDICTED: probable boron transporter 2 [Populus euphratica]
17 Hb_000816_190 0.2081590467 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004125_070 0.2101265445 - - Glycolipid transfer protein, putative [Ricinus communis]
19 Hb_002900_100 0.2146400486 - - PREDICTED: L-type lectin-domain containing receptor kinase S.4-like [Jatropha curcas]
20 Hb_128473_010 0.2160801008 - - -

Gene co-expression network

sample Hb_004117_330 Hb_004117_330 Hb_000413_080 Hb_000413_080 Hb_004117_330--Hb_000413_080 Hb_007575_090 Hb_007575_090 Hb_004117_330--Hb_007575_090 Hb_005144_170 Hb_005144_170 Hb_004117_330--Hb_005144_170 Hb_008185_020 Hb_008185_020 Hb_004117_330--Hb_008185_020 Hb_000302_100 Hb_000302_100 Hb_004117_330--Hb_000302_100 Hb_066514_010 Hb_066514_010 Hb_004117_330--Hb_066514_010 Hb_002272_200 Hb_002272_200 Hb_000413_080--Hb_002272_200 Hb_000011_250 Hb_000011_250 Hb_000413_080--Hb_000011_250 Hb_002490_030 Hb_002490_030 Hb_000413_080--Hb_002490_030 Hb_000413_080--Hb_000302_100 Hb_000413_080--Hb_005144_170 Hb_011918_010 Hb_011918_010 Hb_007575_090--Hb_011918_010 Hb_007741_090 Hb_007741_090 Hb_007575_090--Hb_007741_090 Hb_007575_090--Hb_066514_010 Hb_002900_100 Hb_002900_100 Hb_007575_090--Hb_002900_100 Hb_000302_110 Hb_000302_110 Hb_007575_090--Hb_000302_110 Hb_000191_140 Hb_000191_140 Hb_005144_170--Hb_000191_140 Hb_001143_230 Hb_001143_230 Hb_005144_170--Hb_001143_230 Hb_002774_120 Hb_002774_120 Hb_005144_170--Hb_002774_120 Hb_005144_170--Hb_002490_030 Hb_184541_010 Hb_184541_010 Hb_008185_020--Hb_184541_010 Hb_053709_040 Hb_053709_040 Hb_008185_020--Hb_053709_040 Hb_001247_030 Hb_001247_030 Hb_008185_020--Hb_001247_030 Hb_004125_070 Hb_004125_070 Hb_008185_020--Hb_004125_070 Hb_008185_020--Hb_011918_010 Hb_030992_010 Hb_030992_010 Hb_008185_020--Hb_030992_010 Hb_000302_100--Hb_066514_010 Hb_000302_100--Hb_002272_200 Hb_001357_030 Hb_001357_030 Hb_000302_100--Hb_001357_030 Hb_160405_010 Hb_160405_010 Hb_000302_100--Hb_160405_010 Hb_000302_100--Hb_007575_090 Hb_001329_020 Hb_001329_020 Hb_000302_100--Hb_001329_020 Hb_066514_010--Hb_002900_100 Hb_066514_010--Hb_011918_010 Hb_007441_090 Hb_007441_090 Hb_066514_010--Hb_007441_090 Hb_066514_010--Hb_002490_030 Hb_118507_010 Hb_118507_010 Hb_066514_010--Hb_118507_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.231734 0.590507 1.01316 6.51954 0.493002 0.366777
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.237866 0.747549 0 0.654011 0.317872

CAGE analysis