Hb_004122_040

Information

Type -
Description -
Location Contig4122: 38577-43438
Sequence    

Annotation

kegg
ID pmum:103320358
description polyadenylate-binding protein 2-like
nr
ID XP_012068315.1
description PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
swissprot
ID P42731
description Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2 PE=1 SV=1
trembl
ID M5XRJ2
description Polyadenylate-binding protein OS=Prunus persica GN=PRUPE_ppa002618mg PE=3 SV=1
Gene Ontology
ID GO:0097159
description polyadenylate-binding protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40809: 40815-42336 , PASA_asmbl_40810: 41186-41431
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004122_040 0.0 - - PREDICTED: polyadenylate-binding protein 2-like [Jatropha curcas]
2 Hb_000331_060 0.0625235822 - - PREDICTED: 60S ribosomal protein L17-2-like isoform X2 [Jatropha curcas]
3 Hb_002119_080 0.0654584634 - - PREDICTED: 54S ribosomal protein L24, mitochondrial [Jatropha curcas]
4 Hb_058972_010 0.0656956581 - - PREDICTED: uncharacterized protein LOC105644404 isoform X2 [Jatropha curcas]
5 Hb_001195_260 0.0765925985 - - Mitochondrial 50S ribosomal protein L27 [Hevea brasiliensis]
6 Hb_000107_190 0.077475212 - - 50S ribosomal protein L20 [Hevea brasiliensis]
7 Hb_010315_060 0.077641239 - - PREDICTED: probable arabinosyltransferase ARAD1 [Jatropha curcas]
8 Hb_073973_130 0.0778617868 - - PREDICTED: prolyl-tRNA synthetase associated domain-containing protein 1 [Jatropha curcas]
9 Hb_000392_230 0.0794732612 - - conserved hypothetical protein [Ricinus communis]
10 Hb_022132_050 0.0854892635 - - GTP binding protein, putative [Ricinus communis]
11 Hb_004195_130 0.0865831655 - - PREDICTED: thioredoxin domain-containing protein PLP3B [Sesamum indicum]
12 Hb_001186_090 0.0883646125 - - PREDICTED: nascent polypeptide-associated complex subunit alpha-like protein 2 [Jatropha curcas]
13 Hb_000776_100 0.08880748 - - Cleavage stimulation factor 50 kDa subunit, putative [Ricinus communis]
14 Hb_000610_010 0.091911432 - - PREDICTED: SKP1-like protein 1B [Musa acuminata subsp. malaccensis]
15 Hb_000260_680 0.0921421223 - - PREDICTED: serine/threonine-protein phosphatase 4 regulatory subunit 2-A [Jatropha curcas]
16 Hb_000576_050 0.0922113056 - - Kinase superfamily protein [Theobroma cacao]
17 Hb_032202_120 0.0951268716 - - PREDICTED: uncharacterized protein LOC105643059 isoform X2 [Jatropha curcas]
18 Hb_005588_030 0.0952435647 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 14 homolog [Eucalyptus grandis]
19 Hb_033834_030 0.0962274157 - - PREDICTED: nucleolar complex protein 2 homolog isoform X1 [Jatropha curcas]
20 Hb_001579_230 0.0973213608 - - PREDICTED: uncharacterized protein LOC105644968 [Jatropha curcas]

Gene co-expression network

sample Hb_004122_040 Hb_004122_040 Hb_000331_060 Hb_000331_060 Hb_004122_040--Hb_000331_060 Hb_002119_080 Hb_002119_080 Hb_004122_040--Hb_002119_080 Hb_058972_010 Hb_058972_010 Hb_004122_040--Hb_058972_010 Hb_001195_260 Hb_001195_260 Hb_004122_040--Hb_001195_260 Hb_000107_190 Hb_000107_190 Hb_004122_040--Hb_000107_190 Hb_010315_060 Hb_010315_060 Hb_004122_040--Hb_010315_060 Hb_073973_130 Hb_073973_130 Hb_000331_060--Hb_073973_130 Hb_000331_060--Hb_002119_080 Hb_000331_060--Hb_000107_190 Hb_000331_060--Hb_058972_010 Hb_005337_090 Hb_005337_090 Hb_000331_060--Hb_005337_090 Hb_002119_080--Hb_073973_130 Hb_001186_090 Hb_001186_090 Hb_002119_080--Hb_001186_090 Hb_002119_080--Hb_000107_190 Hb_022132_050 Hb_022132_050 Hb_002119_080--Hb_022132_050 Hb_058972_010--Hb_001195_260 Hb_000576_050 Hb_000576_050 Hb_058972_010--Hb_000576_050 Hb_058972_010--Hb_073973_130 Hb_058972_010--Hb_000107_190 Hb_000610_010 Hb_000610_010 Hb_058972_010--Hb_000610_010 Hb_001195_260--Hb_010315_060 Hb_000392_230 Hb_000392_230 Hb_001195_260--Hb_000392_230 Hb_001195_260--Hb_000610_010 Hb_000751_030 Hb_000751_030 Hb_001195_260--Hb_000751_030 Hb_000107_190--Hb_073973_130 Hb_002296_050 Hb_002296_050 Hb_000107_190--Hb_002296_050 Hb_000107_190--Hb_000610_010 Hb_002192_080 Hb_002192_080 Hb_000107_190--Hb_002192_080 Hb_000107_190--Hb_005337_090 Hb_010315_060--Hb_000392_230 Hb_000649_230 Hb_000649_230 Hb_010315_060--Hb_000649_230 Hb_010315_060--Hb_058972_010 Hb_010315_060--Hb_022132_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.48511 4.19042 9.18492 5.30799 7.633 6.79299
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.95284 8.19406 1.96938 4.80123 2.78148

CAGE analysis