Hb_004123_020

Information

Type -
Description -
Location Contig4123: 24511-36325
Sequence    

Annotation

kegg
ID rcu:RCOM_0888830
description amino acid binding protein, putative
nr
ID XP_002521182.1
description amino acid binding protein, putative [Ricinus communis]
swissprot
ID Q9LZ23
description ACT domain-containing protein ACR12 OS=Arabidopsis thaliana GN=ACR12 PE=2 SV=1
trembl
ID B9S5B3
description Amino acid binding protein, putative OS=Ricinus communis GN=RCOM_0888830 PE=4 SV=1
Gene Ontology
ID GO:0009535
description act domain-containing protein acr12

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40814: 24523-28928 , PASA_asmbl_40815: 33833-34458
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004123_020 0.0 - - amino acid binding protein, putative [Ricinus communis]
2 Hb_000189_570 0.0914149704 - - PREDICTED: uncharacterized protein LOC105647652 [Jatropha curcas]
3 Hb_002045_060 0.0920996489 - - PREDICTED: NADH dehydrogenase [ubiquinone] flavoprotein 2, mitochondrial [Jatropha curcas]
4 Hb_007904_230 0.0998167967 - - PREDICTED: D-cysteine desulfhydrase 2, mitochondrial [Jatropha curcas]
5 Hb_011609_090 0.105747915 - - protein with unknown function [Ricinus communis]
6 Hb_005276_040 0.1120397913 transcription factor TF Family: TRAF PREDICTED: ARM REPEAT PROTEIN INTERACTING WITH ABF2-like [Jatropha curcas]
7 Hb_000364_050 0.1127396246 - - PREDICTED: CBS domain-containing protein CBSX1, chloroplastic [Jatropha curcas]
8 Hb_001019_100 0.1132091029 - - BnaC02g13240D [Brassica napus]
9 Hb_003360_040 0.1151846357 - - PREDICTED: uncharacterized protein LOC105634704 [Jatropha curcas]
10 Hb_000392_550 0.115343917 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 6, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_001892_070 0.1164847242 - - PREDICTED: uncharacterized protein LOC105634071 [Jatropha curcas]
12 Hb_000457_290 0.1170241832 - - ATP-dependent Clp protease proteolytic subunit, putative [Ricinus communis]
13 Hb_001147_050 0.119141546 - - PREDICTED: probable serine/threonine-protein kinase Cx32, chloroplastic [Jatropha curcas]
14 Hb_001900_140 0.1193917466 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
15 Hb_004429_020 0.1194594996 - - PREDICTED: magnesium transporter MRS2-5 [Jatropha curcas]
16 Hb_002217_100 0.1198540425 rubber biosynthesis Gene Name: Dihydrolipoamide dehydrogenase dihydrolipoamide dehydrogenase, putative [Ricinus communis]
17 Hb_000330_090 0.1202545631 - - ornithine carbamoyltransferase, putative [Ricinus communis]
18 Hb_001711_120 0.1212976852 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit 4, chloroplastic [Jatropha curcas]
19 Hb_001016_100 0.1216414263 - - PREDICTED: V-type proton ATPase subunit E-like [Pyrus x bretschneideri]
20 Hb_062226_060 0.1218678719 - - PREDICTED: mitochondrial substrate carrier family protein B-like [Jatropha curcas]

Gene co-expression network

sample Hb_004123_020 Hb_004123_020 Hb_000189_570 Hb_000189_570 Hb_004123_020--Hb_000189_570 Hb_002045_060 Hb_002045_060 Hb_004123_020--Hb_002045_060 Hb_007904_230 Hb_007904_230 Hb_004123_020--Hb_007904_230 Hb_011609_090 Hb_011609_090 Hb_004123_020--Hb_011609_090 Hb_005276_040 Hb_005276_040 Hb_004123_020--Hb_005276_040 Hb_000364_050 Hb_000364_050 Hb_004123_020--Hb_000364_050 Hb_000189_570--Hb_007904_230 Hb_004965_110 Hb_004965_110 Hb_000189_570--Hb_004965_110 Hb_001900_140 Hb_001900_140 Hb_000189_570--Hb_001900_140 Hb_000330_090 Hb_000330_090 Hb_000189_570--Hb_000330_090 Hb_004984_030 Hb_004984_030 Hb_000189_570--Hb_004984_030 Hb_002045_060--Hb_005276_040 Hb_001892_070 Hb_001892_070 Hb_002045_060--Hb_001892_070 Hb_000032_370 Hb_000032_370 Hb_002045_060--Hb_000032_370 Hb_000428_060 Hb_000428_060 Hb_002045_060--Hb_000428_060 Hb_004317_030 Hb_004317_030 Hb_002045_060--Hb_004317_030 Hb_007904_230--Hb_000364_050 Hb_003266_030 Hb_003266_030 Hb_007904_230--Hb_003266_030 Hb_000811_070 Hb_000811_070 Hb_007904_230--Hb_000811_070 Hb_007192_030 Hb_007192_030 Hb_007904_230--Hb_007192_030 Hb_000080_130 Hb_000080_130 Hb_007904_230--Hb_000080_130 Hb_049575_010 Hb_049575_010 Hb_007904_230--Hb_049575_010 Hb_011609_090--Hb_002045_060 Hb_015183_060 Hb_015183_060 Hb_011609_090--Hb_015183_060 Hb_001171_050 Hb_001171_050 Hb_011609_090--Hb_001171_050 Hb_000457_290 Hb_000457_290 Hb_011609_090--Hb_000457_290 Hb_001604_150 Hb_001604_150 Hb_011609_090--Hb_001604_150 Hb_000174_260 Hb_000174_260 Hb_005276_040--Hb_000174_260 Hb_015057_020 Hb_015057_020 Hb_005276_040--Hb_015057_020 Hb_002392_010 Hb_002392_010 Hb_005276_040--Hb_002392_010 Hb_005276_040--Hb_000428_060 Hb_001221_030 Hb_001221_030 Hb_005276_040--Hb_001221_030 Hb_004452_120 Hb_004452_120 Hb_000364_050--Hb_004452_120 Hb_001269_130 Hb_001269_130 Hb_000364_050--Hb_001269_130 Hb_012733_040 Hb_012733_040 Hb_000364_050--Hb_012733_040 Hb_006059_030 Hb_006059_030 Hb_000364_050--Hb_006059_030 Hb_010863_050 Hb_010863_050 Hb_000364_050--Hb_010863_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1784 13.1711 34.0431 19.8754 4.25907 5.56592
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.7559 30.9898 26.8037 24.2867 34.2982

CAGE analysis