Hb_004125_050

Information

Type -
Description -
Location Contig4125: 29518-37059
Sequence    

Annotation

kegg
ID pop:POPTR_0008s16880g
description POPTRDRAFT_418782; phragmoplast-associated kinesin-related protein 2
nr
ID XP_012069867.1
description PREDICTED: kinesin-related protein 13 [Jatropha curcas]
swissprot
ID Q07970
description Kinesin-1 OS=Arabidopsis thaliana GN=ATK1 PE=2 SV=1
trembl
ID A0A067KZF9
description Kinesin-like protein OS=Jatropha curcas GN=JCGZ_02356 PE=3 SV=1
Gene Ontology
ID GO:0005871
description phragmoplast-associated kinesin-related protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40818: 31578-32554 , PASA_asmbl_40819: 32656-33507
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004125_050 0.0 - - PREDICTED: kinesin-related protein 13 [Jatropha curcas]
2 Hb_003244_020 0.1724928248 - - PREDICTED: serine carboxypeptidase-like 27 [Jatropha curcas]
3 Hb_000244_170 0.1832191437 - - PREDICTED: proline-rich receptor-like protein kinase PERK2 [Jatropha curcas]
4 Hb_000062_330 0.1832221042 - - unknown [Lotus japonicus]
5 Hb_071130_050 0.1967505273 - - PREDICTED: intracellular protein transport protein USO1 [Jatropha curcas]
6 Hb_000005_110 0.2026967058 - - histone H2B1 [Hevea brasiliensis]
7 Hb_005181_160 0.2054768414 - - PREDICTED: uncharacterized protein LOC105643546 [Jatropha curcas]
8 Hb_001221_330 0.2104387457 - - PREDICTED: uncharacterized protein LOC105648791 [Jatropha curcas]
9 Hb_000487_120 0.2108793128 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002184_090 0.2128512989 - - DNA binding protein, putative [Ricinus communis]
11 Hb_000181_350 0.2140603221 - - PREDICTED: uncharacterized protein LOC105111090 [Populus euphratica]
12 Hb_030627_070 0.2150437017 - - histone H4 [Zea mays]
13 Hb_007811_040 0.2151076865 - - PREDICTED: trafficking protein particle complex subunit 4 isoform X1 [Gossypium raimondii]
14 Hb_006903_030 0.2179481943 - - PREDICTED: uncharacterized protein LOC105640666 [Jatropha curcas]
15 Hb_000796_010 0.2187455423 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
16 Hb_000189_170 0.220040733 - - calcium ion binding protein, putative [Ricinus communis]
17 Hb_009111_020 0.2217957383 - - PREDICTED: calcium-dependent protein kinase 20-like [Jatropha curcas]
18 Hb_011828_040 0.2224170263 - - PREDICTED: uncharacterized protein LOC105642173 isoform X2 [Jatropha curcas]
19 Hb_001545_070 0.2243363719 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006445_020 0.225104002 - - hypothetical protein L484_026741 [Morus notabilis]

Gene co-expression network

sample Hb_004125_050 Hb_004125_050 Hb_003244_020 Hb_003244_020 Hb_004125_050--Hb_003244_020 Hb_000244_170 Hb_000244_170 Hb_004125_050--Hb_000244_170 Hb_000062_330 Hb_000062_330 Hb_004125_050--Hb_000062_330 Hb_071130_050 Hb_071130_050 Hb_004125_050--Hb_071130_050 Hb_000005_110 Hb_000005_110 Hb_004125_050--Hb_000005_110 Hb_005181_160 Hb_005181_160 Hb_004125_050--Hb_005181_160 Hb_003244_020--Hb_000244_170 Hb_000127_140 Hb_000127_140 Hb_003244_020--Hb_000127_140 Hb_007894_010 Hb_007894_010 Hb_003244_020--Hb_007894_010 Hb_002184_090 Hb_002184_090 Hb_003244_020--Hb_002184_090 Hb_166574_010 Hb_166574_010 Hb_003244_020--Hb_166574_010 Hb_013394_050 Hb_013394_050 Hb_003244_020--Hb_013394_050 Hb_000244_170--Hb_000062_330 Hb_000244_170--Hb_013394_050 Hb_000244_170--Hb_007894_010 Hb_000244_170--Hb_002184_090 Hb_000197_020 Hb_000197_020 Hb_000244_170--Hb_000197_020 Hb_007811_040 Hb_007811_040 Hb_000062_330--Hb_007811_040 Hb_002687_120 Hb_002687_120 Hb_000062_330--Hb_002687_120 Hb_000832_190 Hb_000832_190 Hb_000062_330--Hb_000832_190 Hb_000890_130 Hb_000890_130 Hb_000062_330--Hb_000890_130 Hb_001195_060 Hb_001195_060 Hb_000062_330--Hb_001195_060 Hb_019654_050 Hb_019654_050 Hb_071130_050--Hb_019654_050 Hb_071130_050--Hb_000062_330 Hb_002783_220 Hb_002783_220 Hb_071130_050--Hb_002783_220 Hb_071130_050--Hb_000244_170 Hb_000987_040 Hb_000987_040 Hb_071130_050--Hb_000987_040 Hb_000854_040 Hb_000854_040 Hb_071130_050--Hb_000854_040 Hb_000345_460 Hb_000345_460 Hb_000005_110--Hb_000345_460 Hb_000364_170 Hb_000364_170 Hb_000005_110--Hb_000364_170 Hb_030627_070 Hb_030627_070 Hb_000005_110--Hb_030627_070 Hb_000740_040 Hb_000740_040 Hb_000005_110--Hb_000740_040 Hb_188281_030 Hb_188281_030 Hb_000005_110--Hb_188281_030 Hb_001221_030 Hb_001221_030 Hb_000005_110--Hb_001221_030 Hb_000025_370 Hb_000025_370 Hb_005181_160--Hb_000025_370 Hb_001221_330 Hb_001221_330 Hb_005181_160--Hb_001221_330 Hb_007741_130 Hb_007741_130 Hb_005181_160--Hb_007741_130 Hb_004005_020 Hb_004005_020 Hb_005181_160--Hb_004005_020 Hb_000368_030 Hb_000368_030 Hb_005181_160--Hb_000368_030 Hb_002249_070 Hb_002249_070 Hb_005181_160--Hb_002249_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.281832 0.182291 5.20061 3.31997 0.277849 1.29253
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.10565 1.25645 3.42458 1.17593 0.838234

CAGE analysis