Hb_004125_060

Information

Type -
Description -
Location Contig4125: 38246-39249
Sequence    

Annotation

kegg
ID rcu:RCOM_1168980
description hypothetical protein
nr
ID XP_002528827.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID F4J424
description CRIB domain-containing protein RIC5 OS=Arabidopsis thaliana GN=RIC5 PE=1 SV=1
trembl
ID B9SS58
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1168980 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004125_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000684_100 0.1057802619 - - PREDICTED: cell number regulator 8 [Jatropha curcas]
3 Hb_000421_230 0.1101749609 - - retinal degeneration B beta, putative [Ricinus communis]
4 Hb_161901_020 0.1369827628 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Vitis vinifera]
5 Hb_000009_220 0.1474322185 - - PREDICTED: calcium uniporter protein 2, mitochondrial-like [Jatropha curcas]
6 Hb_000979_060 0.1497477422 - - PREDICTED: protein PLANT CADMIUM RESISTANCE 2-like [Gossypium raimondii]
7 Hb_012545_030 0.1497628407 - - Polyadenylate-binding protein RBP47C [Glycine soja]
8 Hb_000086_430 0.1501846787 - - hypothetical protein JCGZ_17649 [Jatropha curcas]
9 Hb_014231_020 0.1507918336 - - PREDICTED: ras-related protein Rab11D [Jatropha curcas]
10 Hb_090782_010 0.1564469057 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
11 Hb_003147_070 0.1575777354 transcription factor TF Family: NAC PREDICTED: transcription factor JUNGBRUNNEN 1-like [Jatropha curcas]
12 Hb_001863_160 0.1589695242 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
13 Hb_003581_280 0.1613664321 - - KINASE 2B family protein [Populus trichocarpa]
14 Hb_000363_350 0.1631269078 - - PREDICTED: transcription initiation factor TFIID subunit 6-like [Fragaria vesca subsp. vesca]
15 Hb_000011_050 0.1631540948 transcription factor TF Family: MYB PREDICTED: transcription factor GAMYB-like [Jatropha curcas]
16 Hb_000445_100 0.1654722789 - - PREDICTED: glutathione S-transferase TCHQD [Jatropha curcas]
17 Hb_004659_010 0.1654814194 - - Guanine nucleotide-binding subunit beta-2 [Gossypium arboreum]
18 Hb_002218_100 0.1665141823 - - PREDICTED: uncharacterized protein At2g34160 [Jatropha curcas]
19 Hb_003777_110 0.1687729664 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 8 [Jatropha curcas]
20 Hb_002965_080 0.1688377359 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 15-like [Jatropha curcas]

Gene co-expression network

sample Hb_004125_060 Hb_004125_060 Hb_000684_100 Hb_000684_100 Hb_004125_060--Hb_000684_100 Hb_000421_230 Hb_000421_230 Hb_004125_060--Hb_000421_230 Hb_161901_020 Hb_161901_020 Hb_004125_060--Hb_161901_020 Hb_000009_220 Hb_000009_220 Hb_004125_060--Hb_000009_220 Hb_000979_060 Hb_000979_060 Hb_004125_060--Hb_000979_060 Hb_012545_030 Hb_012545_030 Hb_004125_060--Hb_012545_030 Hb_000684_100--Hb_000979_060 Hb_000684_100--Hb_000009_220 Hb_001369_030 Hb_001369_030 Hb_000684_100--Hb_001369_030 Hb_000086_430 Hb_000086_430 Hb_000684_100--Hb_000086_430 Hb_000062_360 Hb_000062_360 Hb_000684_100--Hb_000062_360 Hb_003581_280 Hb_003581_280 Hb_000421_230--Hb_003581_280 Hb_000045_260 Hb_000045_260 Hb_000421_230--Hb_000045_260 Hb_000638_280 Hb_000638_280 Hb_000421_230--Hb_000638_280 Hb_004108_240 Hb_004108_240 Hb_000421_230--Hb_004108_240 Hb_000925_030 Hb_000925_030 Hb_000421_230--Hb_000925_030 Hb_000622_210 Hb_000622_210 Hb_161901_020--Hb_000622_210 Hb_033930_010 Hb_033930_010 Hb_161901_020--Hb_033930_010 Hb_001894_160 Hb_001894_160 Hb_161901_020--Hb_001894_160 Hb_005941_020 Hb_005941_020 Hb_161901_020--Hb_005941_020 Hb_000086_640 Hb_000086_640 Hb_161901_020--Hb_000086_640 Hb_161901_020--Hb_000421_230 Hb_014231_020 Hb_014231_020 Hb_000009_220--Hb_014231_020 Hb_000009_220--Hb_000979_060 Hb_011915_040 Hb_011915_040 Hb_000009_220--Hb_011915_040 Hb_156635_020 Hb_156635_020 Hb_000009_220--Hb_156635_020 Hb_000009_220--Hb_000086_430 Hb_005194_020 Hb_005194_020 Hb_000979_060--Hb_005194_020 Hb_002311_480 Hb_002311_480 Hb_000979_060--Hb_002311_480 Hb_001322_020 Hb_001322_020 Hb_000979_060--Hb_001322_020 Hb_000579_190 Hb_000579_190 Hb_000979_060--Hb_000579_190 Hb_012545_030--Hb_000421_230 Hb_005701_110 Hb_005701_110 Hb_012545_030--Hb_005701_110 Hb_006120_150 Hb_006120_150 Hb_012545_030--Hb_006120_150 Hb_001511_030 Hb_001511_030 Hb_012545_030--Hb_001511_030 Hb_001318_150 Hb_001318_150 Hb_012545_030--Hb_001318_150 Hb_003147_070 Hb_003147_070 Hb_012545_030--Hb_003147_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.432437 1.15634 1.87858 0.630878 0.255571 0.0587739
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.229483 0.541252 0.215579 0.219844 0.358562

CAGE analysis