Hb_004125_070

Information

Type -
Description -
Location Contig4125: 41631-42388
Sequence    

Annotation

kegg
ID rcu:RCOM_1168990
description Glycolipid transfer protein, putative
nr
ID XP_002528828.1
description Glycolipid transfer protein, putative [Ricinus communis]
swissprot
ID O22797
description Glycolipid transfer protein 1 OS=Arabidopsis thaliana GN=GLTP1 PE=2 SV=1
trembl
ID B9SS59
description Glycolipid transfer protein, putative OS=Ricinus communis GN=RCOM_1168990 PE=4 SV=1
Gene Ontology
ID GO:0005829
description pleckstrin homology domain-containing family a member 8-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004125_070 0.0 - - Glycolipid transfer protein, putative [Ricinus communis]
2 Hb_184541_010 0.1112326966 - - PREDICTED: selT-like protein [Jatropha curcas]
3 Hb_001247_030 0.1386128815 - - -
4 Hb_011918_010 0.1518931856 - - hypothetical protein glysoja_041948 [Glycine soja]
5 Hb_008185_020 0.1541352726 - - RING-H2 finger protein ATL3J, putative [Ricinus communis]
6 Hb_188313_010 0.1561317267 - - PREDICTED: LOW QUALITY PROTEIN: carboxymethylenebutenolidase homolog [Jatropha curcas]
7 Hb_009083_030 0.1765760047 - - hypothetical protein POPTR_0007s14760g [Populus trichocarpa]
8 Hb_121694_010 0.1772295837 - - structural constituent of ribosome, putative [Ricinus communis]
9 Hb_000311_040 0.1837372635 - - PREDICTED: S-formylglutathione hydrolase [Jatropha curcas]
10 Hb_000028_260 0.1839524177 - - hypothetical protein glysoja_041948 [Glycine soja]
11 Hb_007741_090 0.1890123679 - - Autophagy-related 8f -like protein [Gossypium arboreum]
12 Hb_004033_020 0.189637892 transcription factor TF Family: MYB-related hypothetical protein PRUPE_ppa014728mg [Prunus persica]
13 Hb_007575_090 0.1965538911 - - putative. proteolipid subunit of vacuolar H+ ATPase, partial [Zea mays]
14 Hb_182713_020 0.1983169772 - - PREDICTED: vesicle-associated membrane protein 727 [Setaria italica]
15 Hb_004079_050 0.1993477415 - - hypothetical protein JCGZ_07229 [Jatropha curcas]
16 Hb_030992_010 0.2036927329 - - acetylornithine aminotransferase, putative [Ricinus communis]
17 Hb_000302_110 0.2068380975 - - UDP-glucosyltransferase, putative [Ricinus communis]
18 Hb_178968_040 0.2072442351 - - conserved hypothetical protein [Ricinus communis]
19 Hb_066514_010 0.207691656 - - hypothetical protein RCOM_0204720 [Ricinus communis]
20 Hb_100137_010 0.2078753025 - - hypothetical protein JCGZ_17848 [Jatropha curcas]

Gene co-expression network

sample Hb_004125_070 Hb_004125_070 Hb_184541_010 Hb_184541_010 Hb_004125_070--Hb_184541_010 Hb_001247_030 Hb_001247_030 Hb_004125_070--Hb_001247_030 Hb_011918_010 Hb_011918_010 Hb_004125_070--Hb_011918_010 Hb_008185_020 Hb_008185_020 Hb_004125_070--Hb_008185_020 Hb_188313_010 Hb_188313_010 Hb_004125_070--Hb_188313_010 Hb_009083_030 Hb_009083_030 Hb_004125_070--Hb_009083_030 Hb_184541_010--Hb_188313_010 Hb_184541_010--Hb_011918_010 Hb_184541_010--Hb_008185_020 Hb_184541_010--Hb_009083_030 Hb_100137_010 Hb_100137_010 Hb_184541_010--Hb_100137_010 Hb_001247_030--Hb_188313_010 Hb_000028_260 Hb_000028_260 Hb_001247_030--Hb_000028_260 Hb_001247_030--Hb_008185_020 Hb_001247_030--Hb_184541_010 Hb_004079_050 Hb_004079_050 Hb_001247_030--Hb_004079_050 Hb_007575_090 Hb_007575_090 Hb_011918_010--Hb_007575_090 Hb_066514_010 Hb_066514_010 Hb_011918_010--Hb_066514_010 Hb_002900_100 Hb_002900_100 Hb_011918_010--Hb_002900_100 Hb_002490_030 Hb_002490_030 Hb_011918_010--Hb_002490_030 Hb_053709_040 Hb_053709_040 Hb_008185_020--Hb_053709_040 Hb_008185_020--Hb_011918_010 Hb_030992_010 Hb_030992_010 Hb_008185_020--Hb_030992_010 Hb_182713_020 Hb_182713_020 Hb_188313_010--Hb_182713_020 Hb_188313_010--Hb_009083_030 Hb_001217_010 Hb_001217_010 Hb_188313_010--Hb_001217_010 Hb_188313_010--Hb_100137_010 Hb_009083_030--Hb_182713_020 Hb_009083_030--Hb_100137_010 Hb_017014_020 Hb_017014_020 Hb_009083_030--Hb_017014_020 Hb_002611_030 Hb_002611_030 Hb_009083_030--Hb_002611_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.1362 38.4393 105.888 924.745 18.3633 114.02
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
58.4707 73.8152 68.4614 120.209 27.8732

CAGE analysis