Hb_004125_110

Information

Type -
Description -
Location Contig4125: 68843-70688
Sequence    

Annotation

kegg
ID rcu:RCOM_1169110
description 60S ribosomal protein L14, putative
nr
ID XP_012069863.1
description PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
swissprot
ID Q9T043
description 60S ribosomal protein L14-2 OS=Arabidopsis thaliana GN=RPL14B PE=2 SV=1
trembl
ID A0A067L774
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_02353 PE=4 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l14

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_40824: 68869-70579 , PASA_asmbl_40825: 69096-69587
cDNA
(Sanger)
(ID:Location)		 032_F22.ab1: 68871-70414 , 034_P12.ab1: 68862-70527 , 045_I08.ab1: 68874-70579

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004125_110 0.0 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
2 Hb_003018_050 0.0735989677 - - PREDICTED: peptidyl-prolyl cis-trans isomerase Pin1 [Jatropha curcas]
3 Hb_003226_210 0.0764590363 - - hypothetical protein PRUPE_ppa013414mg [Prunus persica]
4 Hb_001214_160 0.0804986041 - - 60S ribosomal protein L27B [Hevea brasiliensis]
5 Hb_000997_120 0.0815898881 - - 40S ribosomal protein S15E [Hevea brasiliensis]
6 Hb_000134_070 0.0827577849 - - 60S ribosomal protein L6, putative [Ricinus communis]
7 Hb_002660_030 0.0890076305 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001814_050 0.0941129126 - - PREDICTED: single-stranded DNA-binding protein, mitochondrial isoform X1 [Jatropha curcas]
9 Hb_002838_030 0.0944317704 - - 40S ribosomal protein S25A [Hevea brasiliensis]
10 Hb_130235_010 0.0954513204 - - PREDICTED: ras-related protein RABF1 [Jatropha curcas]
11 Hb_009554_010 0.097222693 - - PREDICTED: multifunctional methyltransferase subunit TRM112-like protein At1g22270 [Jatropha curcas]
12 Hb_008921_020 0.0988791392 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
13 Hb_006915_040 0.101903416 - - PREDICTED: prefoldin subunit 6 [Eucalyptus grandis]
14 Hb_000617_090 0.1024194746 - - hypoia-responsive family protein 4 [Hevea brasiliensis]
15 Hb_006452_040 0.1026993682 - - PREDICTED: signal recognition particle 9 kDa protein [Jatropha curcas]
16 Hb_006816_530 0.1029004879 - - 60S ribosomal protein L18, putative [Ricinus communis]
17 Hb_000084_260 0.1029519727 - - PREDICTED: replication protein A 14 kDa subunit A-like [Jatropha curcas]
18 Hb_027684_020 0.1046307045 - - ribosomal protein S10 (mitochondrion) [Nicotiana tabacum]
19 Hb_000915_120 0.1049680523 - - Peptidylprolyl cis/trans isomerase [Theobroma cacao]
20 Hb_026398_010 0.1050825097 - - hypothetical protein B456_010G132100 [Gossypium raimondii]

Gene co-expression network

sample Hb_004125_110 Hb_004125_110 Hb_003018_050 Hb_003018_050 Hb_004125_110--Hb_003018_050 Hb_003226_210 Hb_003226_210 Hb_004125_110--Hb_003226_210 Hb_001214_160 Hb_001214_160 Hb_004125_110--Hb_001214_160 Hb_000997_120 Hb_000997_120 Hb_004125_110--Hb_000997_120 Hb_000134_070 Hb_000134_070 Hb_004125_110--Hb_000134_070 Hb_002660_030 Hb_002660_030 Hb_004125_110--Hb_002660_030 Hb_002631_020 Hb_002631_020 Hb_003018_050--Hb_002631_020 Hb_006452_040 Hb_006452_040 Hb_003018_050--Hb_006452_040 Hb_001158_150 Hb_001158_150 Hb_003018_050--Hb_001158_150 Hb_130235_010 Hb_130235_010 Hb_003018_050--Hb_130235_010 Hb_000122_020 Hb_000122_020 Hb_003018_050--Hb_000122_020 Hb_003226_210--Hb_001214_160 Hb_000283_110 Hb_000283_110 Hb_003226_210--Hb_000283_110 Hb_006816_530 Hb_006816_530 Hb_003226_210--Hb_006816_530 Hb_003226_210--Hb_002660_030 Hb_003226_210--Hb_000134_070 Hb_000363_480 Hb_000363_480 Hb_003226_210--Hb_000363_480 Hb_001214_160--Hb_006816_530 Hb_001214_160--Hb_000363_480 Hb_000102_020 Hb_000102_020 Hb_001214_160--Hb_000102_020 Hb_011628_040 Hb_011628_040 Hb_001214_160--Hb_011628_040 Hb_007120_090 Hb_007120_090 Hb_000997_120--Hb_007120_090 Hb_002838_030 Hb_002838_030 Hb_000997_120--Hb_002838_030 Hb_012395_130 Hb_012395_130 Hb_000997_120--Hb_012395_130 Hb_004543_040 Hb_004543_040 Hb_000997_120--Hb_004543_040 Hb_027684_020 Hb_027684_020 Hb_000997_120--Hb_027684_020 Hb_000136_170 Hb_000136_170 Hb_000134_070--Hb_000136_170 Hb_000134_070--Hb_002660_030 Hb_004157_030 Hb_004157_030 Hb_000134_070--Hb_004157_030 Hb_086639_090 Hb_086639_090 Hb_000134_070--Hb_086639_090 Hb_001505_020 Hb_001505_020 Hb_000134_070--Hb_001505_020 Hb_002713_070 Hb_002713_070 Hb_002660_030--Hb_002713_070 Hb_011311_010 Hb_011311_010 Hb_002660_030--Hb_011311_010 Hb_026398_010 Hb_026398_010 Hb_002660_030--Hb_026398_010 Hb_002925_030 Hb_002925_030 Hb_002660_030--Hb_002925_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
140.677 67.2574 101.273 278.644 110.88 256.155
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
368.36 767.609 261.539 198.891 48.1159

CAGE analysis